LOC111193479


Basic Information

Item Value
gene id LOC111193479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 14061669 ~ 14062007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650549.1
TCAAGGGGAGCAACAACTTTGGCAGACATTTCAAGGAAGTAATTTCACAAGCTCCACTTGATATGGAGAATGGGGAACCCAACCTGTATTTCTGCAAAGGTCTCGTGTCCCACATTTCGAAGTTCCTTCTCCCATATGCTGCATTGTGGACTGGCATAATGCTAGGTGACCTTGGACGACACGGAACAGGACATGTATACAAGCAGTATACAAAGAGATACAGAGTCCTGAAACAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650549.1 True 238 lncRNA 0.45 2 14061669 14062007

Neighbor

gene id symbol gene type direction distance location
LOC111193619 NA coding upstream 126 14051804 ~ 14061543 (+)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 133871 13921248 ~ 13927798 (+)
LOC103047056 npy2rl,LOC108439369,LOC107758849,LOC107590775,LOC107714138,LOC107665946,LOC107692719 coding upstream 256440 13773430 ~ 13805229 (+)
LOC103023349 LOC108439383,LOC108258976 coding upstream 381448 13676444 ~ 13680221 (+)
LOC103023667 LOC108439371 coding upstream 385312 13673298 ~ 13676357 (+)
LOC103033906 LOC108258922,LOC108439361,LOC107564279,LOC107692629,LOC107665976 coding downstream 161973 14223980 ~ 14244056 (+)
LOC103031172 LOC103031172,LOC108439360 coding downstream 220920 14282927 ~ 14290159 (+)
LOC103031792 LOC108439359,LOC107723198,LOC107564241,LOC107692626,LOC100334711 coding downstream 246919 14308926 ~ 14330415 (+)
knl1 NA coding downstream 326451 14388458 ~ 14409396 (+)
dmd LOC108439357 coding downstream 348676 14410683 ~ 14664759 (+)
G103349 NA non-coding upstream 151326 13888907 ~ 13910343 (+)
G103347 NA non-coding upstream 193446 13867413 ~ 13868223 (+)
G103323 NA non-coding upstream 296203 13757846 ~ 13765466 (+)
LOC111193536 NA non-coding upstream 436223 13606108 ~ 13625446 (+)
LOC111193537 NA non-coding upstream 456291 13603596 ~ 13605378 (+)
G103410 NA non-coding downstream 57731 14119738 ~ 14129753 (+)
G103464 NA non-coding downstream 137030 14199037 ~ 14199576 (+)
G103482 NA non-coding downstream 187113 14249120 ~ 14249825 (+)
G103485 NA non-coding downstream 192363 14254370 ~ 14254846 (+)
G103488 NA non-coding downstream 196817 14258824 ~ 14259426 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 126002 13929065 ~ 13935667 (+)
sh3pxd2a sh3pxd2a other upstream 1029163 12851001 ~ 13032506 (+)
cryzl1 cryzl1 other upstream 1539366 12483622 ~ 12522303 (+)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 2036905 12000639 ~ 12024764 (+)
map2k7 map2k7,LOC107676852,LOC107712243 other upstream 2766854 11274746 ~ 11294815 (+)
G103490 LOC106510829 other downstream 198618 14260625 ~ 14261539 (+)
G103551 NA other downstream 556628 14618635 ~ 14619082 (+)
G103561 NA other downstream 629036 14691043 ~ 14692199 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other downstream 937448 14999455 ~ 15297939 (+)
G104000 NA other downstream 2389168 16451175 ~ 16458209 (+)

Expression


Co-expression Network