LOC103024499


Basic Information

Item Value
gene id LOC103024499
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 790106 ~ 792100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650557.1
caggtaaacagagggcaggagcacacaggaccaaatgagagagaaacacaagacagacatgggctaaactgtgacagcCAGAGTTAGACTTGATATGGAGTGTTAGTGAGGAGGGAATGGTTTAGTACAGGCTATTATCCCCATCTAGTGGCTGGAATCGATGGACCATTGACAGTAAGCACAGGATTGCTACATGGGGGCGTGGCCAGAACAGGAAGAGGCAAGTTTTACCCATTTCTTCAAGTCTGCTGACTGCCACCACTCCTttcttttttggttatttccTGGTTTATCTAAGTAATCCTTATTTTCATTTAAGATCTGATTTTCTAAGcaatgtgttcatttatttaccaTAAATCTTTTTATGGACAGTATTTTACTGTGGATTACTTTGACATTGAGAGTAGGATATTCTTGCCGAGCCACCACAGTGTTTTCAGTAGGAGAGGAAAACCTTCTTCCATCAAGCTTAACATGAATCAACCAAGGACTTCCTCCAGTTCGACTCCCCCTTCCCATTCACCAGAGTTTTATATTAGGAGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650557.1 True 549 lncRNA 0.43 3 790106 792100

Neighbor

gene id symbol gene type direction distance location
mvb12a NA coding upstream 10244 769009 ~ 779862 (+)
LOC103030233 LOC108413570 coding upstream 32782 735081 ~ 757324 (+)
LOC103043293 LOC108413567,LOC107572909 coding upstream 61983 656668 ~ 728123 (+)
LOC103026069 NA coding upstream 241826 541945 ~ 548280 (+)
LOC107197104 NA coding upstream 330330 454872 ~ 459776 (+)
LOC111193580 NA coding downstream 14914 807014 ~ 809445 (+)
LOC103028614 LOC108415945,LOC106564086 coding downstream 22360 814460 ~ 829481 (+)
LOC103028300 LOC107686882 coding downstream 38295 830395 ~ 848102 (+)
LOC103027992 LOC108413169 coding downstream 63866 855966 ~ 884535 (+)
LOC103027665 LOC108413281,LOC108412240 coding downstream 97110 889210 ~ 895800 (+)
G99604 NA non-coding upstream 158272 631505 ~ 631834 (+)
G99596 NA non-coding upstream 178106 606380 ~ 612000 (+)
G99588 NA non-coding upstream 209369 580352 ~ 580737 (+)
G99582 NA non-coding upstream 214703 569657 ~ 575403 (+)
LOC111193491 NA non-coding upstream 258019 530003 ~ 532087 (+)
G99623 NA non-coding downstream 56099 848199 ~ 851469 (+)
G99642 NA non-coding downstream 104319 896419 ~ 896789 (+)
G99645 NA non-coding downstream 105247 897347 ~ 898314 (+)
G99651 NA non-coding downstream 176802 968902 ~ 971158 (+)
G99654 NA non-coding downstream 186630 978730 ~ 980663 (+)
LOC111193492 NA other upstream 196906 590183 ~ 593200 (+)
LOC111193579 NA other upstream 249635 534029 ~ 540471 (+)
LOC103036139 NA other upstream 293730 487474 ~ 496376 (+)
G99561 NA other upstream 307887 474660 ~ 482219 (+)
LOC103031902 NA other upstream 753042 20991 ~ 37064 (+)
ubl5 ubl5 other downstream 316376 1108476 ~ 1110592 (+)
G99710 NA other downstream 389327 1181427 ~ 1184269 (+)
LOC111193582 NA other downstream 504315 1296415 ~ 1298377 (+)
LOC111193593 NA other downstream 1053391 1845491 ~ 1853019 (+)
LOC103047668 NA other downstream 1093128 1885228 ~ 1889237 (+)

Expression


Co-expression Network