LOC111193544


Basic Information

Item Value
gene id LOC111193544
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 16433809 ~ 16437632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650593.1
taattaagtTCATTTTTCCAGCACCTGCATTTTTTCTAGCCCAACTACATTGAGATATGGAAAATAAGACTTTTAATGTGGTTAGGTAATATTCAGACTGTGACCTGATCattgaaaatagatgtttaacaTTATGGGTAtcatactgtactgtgttgGATTTGCATTTGATTTTGTGGGCACTGTAGTGATTTTAGGTGTATTGCTATGATCTTGTTTGTCTTCACCCCTCTATTTCTTTGTTGTCttactttctctcactttcttttcttttgaggGGCATTGTGCTCTACATGTTTCTCCAATGATTCCTCTGGATCACAAACTGTCCCAAAGCAACCTGTCCCAAAGGTGTTTAAAGGTGCTCCAacactccagagaacacagatccACTCCTCCACAGCCCAAAAATGGGGGCTATATAACCTTCTAGCCAACACTTGGCAATGGACAAGACCCACTGACACTCGGCTAATGACGATTTTACAGGACAGTCCAACAAAGGACCTGGCCTACCTAGACTGCAACCTAGGCATTGAAACACAGCTACTGAAgctagacctgtggtggctgGCTTTATTTTTGAGAGACCTTGAGACCTTTAAGAAACCCAGGGACTGCAGATGAAAATGAGGCATTTGTCTGAATCTGGCACATTTATGTTACGAAGTAATGATGTTGACTAATGTGTATTGtccctgttatttatttaaataaataaatcatatcaAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650593.1 True 733 lncRNA 0.40 2 16433809 16437632

Neighbor

gene id symbol gene type direction distance location
pdcd11 pdcd11,LOC104950700 coding upstream 15397 16388056 ~ 16418412 (+)
taf5 taf5,LOC102783881 coding upstream 50311 16372790 ~ 16383498 (+)
LOC103039552 NA coding upstream 108694 16321122 ~ 16325115 (+)
LOC103039857 caly,LOC103039857,LOC108434710,LOC108258305,LOC105891014,LOC107583165,LOC107684294 coding upstream 179571 16236028 ~ 16254238 (+)
dmd LOC108439357 coding upstream 1769050 14410683 ~ 14664759 (+)
LOC103038100 NA coding downstream 5326 16442958 ~ 16448489 (+)
LOC103037127 NA coding downstream 139211 16576843 ~ 16601035 (+)
LOC103036820 NA coding downstream 173969 16611601 ~ 16625584 (+)
LOC111188171 zc3h12c coding downstream 191057 16628689 ~ 16662345 (+)
LOC103036216 NA coding downstream 353116 16790748 ~ 16798890 (+)
G103972 NA non-coding upstream 174811 16258785 ~ 16258998 (+)
G103945 NA non-coding upstream 347965 16085643 ~ 16085844 (+)
G103943 NA non-coding upstream 353649 16079730 ~ 16080160 (+)
G103940 NA non-coding upstream 382407 15993117 ~ 16051402 (+)
G103929 NA non-coding upstream 573087 15860511 ~ 15860722 (+)
G104001 NA non-coding downstream 106624 16544256 ~ 16546010 (+)
G104082 LOC107662997,LOC107757412,LOC108434698,LOC107707084 non-coding downstream 245108 16682740 ~ 16687373 (+)
G104144 NA non-coding downstream 423356 16860988 ~ 16861202 (+)
G104151 NA non-coding downstream 489592 16927224 ~ 16934483 (+)
G104162 NA non-coding downstream 609140 17046772 ~ 17047740 (+)
LOC103032764 LOC108443686,LOC108258285,LOC107746061,LOC107684317,LOC107566138,LOC105891017,LOC107690754,LOC107086972 other upstream 1135870 14999455 ~ 15297939 (+)
G103561 NA other upstream 1741610 14691043 ~ 14692199 (+)
G103551 NA other upstream 1814727 14618635 ~ 14619082 (+)
G103490 LOC106510829 other upstream 2172270 14260625 ~ 14261539 (+)
G103376 zgc:77880,LOC108439367,LOC107692630,LOC107723165,LOC103363053,LOC107758853,LOC105904859,LOC107590776 other upstream 2498142 13929065 ~ 13935667 (+)
G104000 NA other downstream 13543 16451175 ~ 16458209 (+)
col17a1 col17a1,LOC108434660,LOC107684270,LOC107583183 other downstream 26306 16463938 ~ 16507787 (+)
LOC103037450 NA other downstream 118062 16555694 ~ 16574433 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other downstream 450754 16888386 ~ 16894592 (+)
LOC103031769 prps2 other downstream 682215 17119847 ~ 17138973 (+)

Expression


Co-expression Network