LOC111193552


Basic Information

Item Value
gene id LOC111193552
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19782129 ~ 19782686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650596.1
ttttttttcaattcatagACAACTTATCAAATCCAtttgacaaacactttactaagCTTCTACGTCAGTCTAAGCTCATATGTTATAGGTGGTGAACTTTTGTAAAATACAGCCACCACGAGTGGAAATCTGAGGTGTACGGAACACCGTTGGCTGTTTGTTGGCAGGTGTACGGAATACTGATGCACACTGGTTACAGGACTGAGGTcagttttttggggttttctttaaaactattggtccaaaagtaaccaatcaaaatttattttggtTGCAAGGCAGATATTCCATAGTTTAGCCAATCACTGCAGCCTATTTGAACTCGGGTATTTTCGTAATATCCACTCAAACGCGGAAAATACCGAAAATGTGTACGGAATACCGTTCTCTTAcgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650596.1 True 397 lncRNA 0.39 2 19782129 19782686

Neighbor

gene id symbol gene type direction distance location
cep97 cep97 coding upstream 55021 19713576 ~ 19727108 (+)
LOC103039009 NA coding upstream 78707 19688960 ~ 19703422 (+)
LOC103039332 LOC108429797,LOC108258862 coding upstream 97979 19660005 ~ 19684150 (+)
LOC103026741 LOC108429797 coding upstream 134018 19623428 ~ 19648111 (+)
LOC103034347 LOC108429797,LOC108258862 coding upstream 174321 19594309 ~ 19607808 (+)
hikeshi hikeshi,LOC106574699 coding downstream 10188 19792874 ~ 19798191 (+)
ccdc81 NA coding downstream 16907 19799593 ~ 19822020 (+)
prss23 prss23,LOC107570079,LOC106575973 coding downstream 96089 19878775 ~ 19884491 (+)
LOC103043041 LOC108429787 coding downstream 299196 20081882 ~ 20145614 (+)
dusp27 dusp27,LOC102309085 coding downstream 370719 20153405 ~ 20165191 (+)
G104891 rpl24,LOC107575619,LOC107551103,LOC107751658,LOC107662676 non-coding upstream 71315 19706646 ~ 19710814 (+)
G104841 NA non-coding upstream 91540 19690100 ~ 19690589 (+)
G104811 NA non-coding upstream 221538 19560033 ~ 19560591 (+)
G104809 fdx1,LOC108434718,LOC108259004,LOC102789999 non-coding upstream 223140 19543703 ~ 19558989 (+)
G104799 NA non-coding upstream 246081 19534456 ~ 19536048 (+)
G104921 NA non-coding downstream 30697 19813383 ~ 19863419 (+)
G104944 NA non-coding downstream 164157 19946843 ~ 19947441 (+)
G104950 NA non-coding downstream 213893 19996579 ~ 20008771 (+)
G105007 NA non-coding downstream 419949 20202635 ~ 20202939 (+)
G105008 NA non-coding downstream 420508 20203194 ~ 20205750 (+)
nfkbiz nfkbiz other upstream 37205 19734226 ~ 19744924 (+)
G104656 pcdh8 other upstream 858926 18919060 ~ 18923203 (+)
LOC111193547 NA other upstream 2362991 17406595 ~ 17419138 (+)
LOC103031769 prps2 other upstream 2643156 17119847 ~ 17138973 (+)
LOC103035065 nhlh2,LOC103035065,LOC108434665,LOC108258389,LOC107739819,LOC105019883 other upstream 2887537 16888386 ~ 16894592 (+)
G105276 NA other downstream 1206587 20989273 ~ 21055483 (+)
G105312 abcb6,abcb6a,LOC107556273,LOC107750068 other downstream 1236352 21019038 ~ 21028990 (+)
G105357 NA other downstream 1544506 21327192 ~ 21369204 (+)
LOC103046939 LOC107701771,LOC107725347,LOC107565259 other downstream 2472399 22255085 ~ 22283453 (+)
LOC103045705 LOC107725350,LOC107692700,LOC108439093,LOC107565240,LOC108441473 other downstream 2742571 22525257 ~ 22588961 (+)

Expression


Co-expression Network