LOC111193572


Basic Information

Item Value
gene id LOC111193572
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28813405 ~ 28814051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650609.1
GTGGCAGTAGGGAGCCCTGTTACCATTAACCTTGGCCTTAATCAAACTGATGAGCTTGTATGGAATCACAACTCTCAGAGAGTGTTTAAAGGAAATGTTAGCGCATTaccaacaaaactaaacaacGTGAAGCTGACCAGTGATGGGTCCCTTATAATcagttctgtaaaaaaagaagataatgGCGACCATGAGTTTGAAGCTTTCCTTTCGAATGGCACatctaaagcaaaaaaaacaatcacactGTGTGTTCATgaaaagcCACCTAAGCCAACGGTGAATGTCACATTTACAGATGGGACACTTTACATCAGCTGTGAAGTTAAAGACAAAACCGGACGGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650609.1 True 464 lncRNA 0.40 2 28813405 28814051

Neighbor

gene id symbol gene type direction distance location
LOC111193571 NA coding upstream 21414 28785964 ~ 28791991 (+)
LOC111193466 NA coding upstream 110484 28702012 ~ 28702921 (+)
LOC111193465 NA coding upstream 116309 28692844 ~ 28697096 (+)
LOC111193464 NA coding upstream 121100 28689555 ~ 28692305 (+)
LOC111193463 NA coding upstream 813553 27993999 ~ 27999852 (+)
LOC111193570 NA coding downstream 27128 28841179 ~ 28865225 (+)
LOC111193469 NA coding downstream 311822 29125873 ~ 29127641 (+)
LOC103024513 LOC107555266,LOC106574727,LOC106575573,LOC108429863,LOC107568777,LOC107709315,LOC107718016,LOC105889574,LOC100333907 coding downstream 394500 29208551 ~ 29241597 (+)
LOC103025657 runx1,LOC108429862,LOC107571884 coding downstream 603171 29417222 ~ 29519834 (+)
donson LOC107555241 coding downstream 724286 29538337 ~ 29558043 (+)
G106800 NA non-coding upstream 34925 28778182 ~ 28778480 (+)
G106799 NA non-coding upstream 36368 28776546 ~ 28777037 (+)
G106795 NA non-coding upstream 78434 28734295 ~ 28734971 (+)
G106792 NA non-coding upstream 85685 28727286 ~ 28727720 (+)
G106791 NA non-coding upstream 86311 28726720 ~ 28727094 (+)
G106807 NA non-coding downstream 15248 28829299 ~ 28850608 (+)
G106817 LOC108258578,LOC108429866,LOC108258576,LOC107568776,LOC107653679,LOC107717913 non-coding downstream 139535 28953586 ~ 29063678 (+)
G106838 atp1a1a.4,LOC108429867,LOC108258577,LOC108429865 non-coding downstream 158681 28972732 ~ 28974394 (+)
G106822 NA non-coding downstream 236384 29050435 ~ 29052453 (+)
G106819 NA non-coding downstream 238480 29052531 ~ 29058905 (+)
LOC103027743 NA other upstream 89379 28703067 ~ 28724026 (+)
G106673 NA other upstream 746422 28066352 ~ 28066983 (+)
G106661 lancl1 other upstream 791358 28014516 ~ 28022047 (+)
LOC103037236 NA other upstream 2641604 26154417 ~ 26171801 (+)
LOC111193565 NA other upstream 3242584 25458815 ~ 25570821 (+)
LOC111193573 NA other downstream 335014 29149065 ~ 29159680 (+)
G107117 NA other downstream 966275 29780326 ~ 29780927 (+)

Expression


Co-expression Network