G54687


Basic Information

Item Value
gene id G54687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6945823 ~ 6946041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62239
TAAATTTTAGAACTGTGGTTTCATTCTGTTCAGACATTGGCCTGGGAGAAAAAGTGAAAAAGACGAAGAGAGAGCAAGATCAGGGTTTGATTGCTGAGAGGTAACATCCACAGGTTAAGCTCCGGCCCTGTAACATAACAGACCAAACCTAATCATGGCGTGATCATCTGTTTTTAAAAGCACAACAGCACCGTTACAGATTTCAATCAGCACTTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62239 True 219 lncRNA 0.42 1 6945823 6946041

Neighbor

gene id symbol gene type direction distance location
CI01000009_06212264_06213131 NA coding upstream 732008 6212264 ~ 6213815 (+)
CI01000009_06205817_06207701 TEX30 coding upstream 738112 6205817 ~ 6207711 (+)
CI01000009_06195742_06204011 KDELC1 coding upstream 741474 6195742 ~ 6204349 (+)
CI01000009_06130188_06193279 STXBP5L coding upstream 752419 6130064 ~ 6193404 (+)
CI01000009_06002120_06017019 GTF2E1 coding upstream 928041 6002120 ~ 6017782 (+)
CI01000009_06975071_07009147 ARHGAP15 coding downstream 29030 6975071 ~ 7009417 (+)
CI01000009_07051811_07054331 NA coding downstream 104677 7050718 ~ 7054625 (+)
CI01000009_07091022_07092696 NA coding downstream 144877 7090918 ~ 7092801 (+)
CI01000009_07101768_07105835 NA coding downstream 155228 7101269 ~ 7106009 (+)
CI01000009_07111833_07115320 NA coding downstream 165681 7110351 ~ 7115443 (+)
G54626 NA non-coding upstream 5031 6896121 ~ 6940792 (+)
G54627 NA non-coding upstream 32227 6805307 ~ 6913596 (+)
G54433 NA non-coding upstream 313045 6632544 ~ 6632778 (+)
G53903 NA non-coding upstream 368681 6576716 ~ 6577142 (+)
G53901 NA non-coding upstream 375210 6570411 ~ 6570613 (+)
G54694 NA non-coding downstream 11678 6957719 ~ 6957928 (+)
G54752 NA non-coding downstream 174454 7120495 ~ 7120779 (+)
G54779 NA non-coding downstream 210840 7156881 ~ 7157158 (+)
G54946 NA non-coding downstream 255649 7201690 ~ 7201927 (+)
G53651 NA other upstream 697431 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 1013022 5931718 ~ 5943899 (+)
G53388 NA other upstream 1406769 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 3736839 3202207 ~ 3208984 (+)
G51529 NA other upstream 3883236 3062033 ~ 3062587 (+)
G56100 NA other downstream 2183259 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 2907318 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 4814745 11761606 ~ 11766944 (+)
G57811 NA other downstream 4987901 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 5486517 12432538 ~ 12436017 (+)

Expression


Co-expression Network