nostrin (nostrin)


Basic Information

Item Value
gene id nostrin
gene name nostrin
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 131108 ~ 174925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222157
ATTCGTGTAAAGAACCACTGTCCAATTAAAATTCAAAATGGAAAGGCGATAAAAGGTTTTTGTGTGATTGCATTTGTTGTTAAGGACTAACAACCTTACTGTCTGTTTTCTACTGTCTACGGTCATGTACTTAATGTTGTGTCTGTGCTAAATTTAAAAccatcttcaaaaaaaaaaaaaaaaaAAAAAATGCACAGATATacgtgctggaacacagaatcttctcgctatatttattttcttgctccCGCGCCACACAGCTCTGGCCAGTCAGAGGAGACAACTTGCTAGGGAGGTTTACtggggagaaaacgctccaagtaaatgatctcatcaactgatccagaccatagaaatTAACTAAGGACTGGAGAGAACAGCGATGTCCTCTGAAAGCACATCAGACCTCGGtcaaagaaacacagaggaaactgagcagATACTTGATGCGAACACTTTAAAACTGGATCTTTTGGAGGCCACACACTGCAAACTGAACCAAGCTTTGATGGATTTAGAGGGAAAACCAAGGCCTTTACATCGGTTTAGTAACAGCATCACGAAATTCAAAGATAAGGTGCTGAGTTTTGCAGTATCGGTAAATGCAAGGCTTTATATGACTATTCATCTGAGAGAACTGACGAGTTAAACATTAAGGAAGGAGATCTTCTTAACATCCTTCAGAAGGATGATAGTGGGTGGTGGTTTGGAGAACTGAATGGGGAGAGAGGGCACTTTCCTTCCACATATATTGAGGAGCTGCCCATCTTAAACGTACCAAAGTCTTCTGATGCTTAACTCATGGAAAAGAtagatttttgtattattatattgtcaCGCTGAAGCACTTTGTATATGTGACCATATCAAAGCGTACACTTTGTTTAGGGaccttgattttatttttttaagcgtTAAATAAAGCAGCGATGCACCCCACTCTATTTTGCCAGCTAAACCTTTAGTACCTGAGAAACTAGATGCGCTATAAAAAAAATTTGGTTAAAACTGTTCACTTGCAACCAACTTTTATCTGCTTTCATTTATCTGTGGAATTTGTTGATGAAATTTAAATGCATAAACTGTTGTTGTAGCTGAAGCTCTGTCAAATTGtttttctctggtctgaatctattatgtttgtaaatgttaaagttgtTTTCACTACCTGAGTGCAATTTCTGAATTCACACCCACCCAAACAAATCACACCAAGGGTGAAAATGAGACACAATCCAATTTAACTGGATAAGAAAATGCAGGcgtgaaagcacccttaattAAATGATAACACGGTGTTTTCTCATTGTTTTGATGCTCTTTGTATTAAGATCATagtatatagctctggaaaataagagaccacttaaaaataatcaagaggaagatggatgatcaatcacaagccatcaaaccaagctgaactgctttaattttttgcaccaggagtggcataaaattatccaaaagtagtatgtaagactggtggaggagaacatgccaagatgcatgaaacctgattttaaaaacagggttattccaccaaatattgatttctgaactattaaaactttatgaatgttatatcagccatttctcattttctacaaataaatgctctaaatgacaattttaatttttaattttggagaaatgttgtccgtagttatATAAATAGTTATATAGTAGAATaaaaattttactcaaacatatacctataaatagcaaaatcagaaaaactgatttagaaactgaagtggtctctttatttttttacagagctgtatgtgttcaATTGCAGACCACACTTTaagttttaagaataaaaagggTGCCATAAAAAGTGTCATATATAAGAATCACATTTGGATCCTAAAGTATCATCGGTGTAATAGAAATGCCTGAGTGTAACAAGGTTTCATGTTTTTAGACCTTTAAAATGTCATTTATATTTACACCTCCTCTCTGTTACATACATGGCTTTCTTAAGTTCTAGTGTTTTTTTCCGAATGCAATTGCACAAAGAACCATTTACAGCtccactcttttttttgtctgtgtaaTTCATTCTAGTtgctttttaatcactttaCCCAGTCTacataataaaaacagcttTGGATAAAACGTGTAACAagatatttgcattttattatatacaaaaGCACAAACAAATGACATGTAACATGTACAatgaaatgttaataaaataaacatcactTATGTGGACTACTAATAAGCTGATTCAAACAAAACCagattaagtttaagtttagtttgtATGAGACTATGAAAAGAATTTAAATGCACTGGATCCTGTCTACCAATCAGATTAGGTGGTCTTTGTAGCATTGTGTAGTGCCACAAACTCTTTTCTGACATTGGCGAGGAAGGCTGAGAAGTTGTTGGTCTCCTGCAGTCTACGCTCCAGATAATCCATCTGCGCCAGCGGAGGATCACAGGAAACAACTGCAAAAGCAAATGACATACTAATCACACATTGCTACTACTTCTTGTTCTTTATACAAACatgtttattactttattttgtattagtCATGAGCTAAAGGTGTTCTAATGACCACTTCAGGATCAGACAAgcactttgtgtgtaatgaaGTATCATTTCTTTACCAGAAAATCACAATtcgccatgttttctttctccaaaattcaaagatttctgtattatttttattaggtaCTCAGATCTATTATAAATGCACAGCAAAGGAGAGAAAACTTTATCTTGCACATTATAGCTTCATTCATCATAT
>XM_022680019.1
agagctgtagatatattatataggtTGATGACGTTCCCCTTTCAGTATGTGTGTATGGTAATGTTAGATTGGCACAGTAGTTTTATATTTGCTTGGCCTGCCCAGGTGATTTCCACATGCATGACTTAAAGGAGGAGAATGGTCAAAGTTTAAAAGTGCAAAGTCAACAAGCAGCCAGACTGGAGATGAAGGACCCACTGGGAACTTGCACTTACAGCCTGCTGTACGAGGACCTCAAGAGATTCTCGAAAAATGGAGAGACTTTTTGCAAAGAACTTGTAACAGTTTTCCAGCAACGATCAGAGCTGGAGATCAACTATGCCAAAGGCCTGCAGAAGCTGGCAGGGAAACTCATCAAAGTATCCAAAgccatgagtaacaaCTCAACGTACAATGCCTGGTCTCTGGTGTCAAATGAGATGTTCTCCATAGCAGATGCTCACAGAATACTGGGACATGCTCTACAACAAGATACCGTTCTGGAGATCCGGCAGATCCTGGATGAACACACCAAAAGGAAGAAGCCaCTGGACAACACCATTGAAAAATCTGGAAAACTTGTCGTTACAAACTGGAATGAACAACTGAAGGTGAAGAAAAAGCTGAGTGCTTTAACCAGAGAACATGAGGCACTGTTCAGTTTTGTGGAAAAGAACAAACAGATAtgcacagagaaagagaagcaaAAGATGTTTAACAGACTGACTaagtcagcagagcttcaggtCAAGGTTGATGAGGAGTACTTCAATATGAACATGGACGGCCATAAGATGAGACTGAAGTGGGAGAACACACTGAAATCCTGCTATCAGatcatTCAAGAGCTGGAGAAGCAAAGGATAGAGACTCTGTGCAGCACACTAAATAAATATAGTCTCCACATGTCCAGCTATAGCCAAACTCTTCTTCAAAGTGAGAAACAGATCGAGGAGGCCATTGGTAGAGTGGATGTGGAGAAAGACCTCCAGACTCTGGTGGAAGACACCTGTGTTACTGCAGAAGATACAGAGGCTGAATTTCTGATGGCTGATTACTTTGAGGAGGATGGGAGGACAAtaatggggagagaaagaagacGAGACGCGTTAAAGATTAAACTTCAGCGACTGGAGGAATGGATCACAAGAACTAAGGAGGATAAagatgGACTGGAGAGAACAGCGATGTCCTCTGAAAGCACATCAGACCTCGGtcaaagaaacacagaggaaactgagcagATACTTGATGCGAACACTTTAAAACTGGATCTTTTGGAGGCCACACACTGCAAACTGAACCAAGCTTTGATGGATTTAGAGGGAAAACCAAGGCCTTTACATCGGTTTAGTAACAGCATCACGAAATTCAAAGATAAGgaCTGTGAGCACAGCACAGTCAAACTGTCACGACCAGTTAAGATCAAAAAGACACCACTCAGATCACGGCAGTCTTTGAGGACTTCAATCATGTATAAAGGCCCTGCTAAAAATGGAGCGTCCCGCCAGGACTCTGCTCCATCTACAGGGGCTGGCACTGCATCAGCACAACTCAGCCCCACAGAGCCTCAGAGAGCTGAGCTTAACGGAGCTCTGCCCCACTCTGAAGATGAAGCTGGCAAAGGTGCTGAGTTTTGCAGTATCGGTAAATGCAAGGCTTTATATGACTATTCATCTGAGAGAACTGACGAGTTAAACATTAAGGAAGGAGATCTTCTTAACATCCTTCAGAAGGATGATAGTGGGTGGTGGTTTGGAGAACTGAATGGGGAGAGAGGGCACTTTCCTTCCACATATATTGAGGAGCTGCCCATCTTAAACGTACCAAAGTCTTCTGATGCTTAACTCATGGAAAAGAtagatttttgtattattatattgtcaCGCTGAAGCACTTTGTATATGTGACCATATCAAAGCGTACACTTTGTTTAGGGaccttgattttatttttttaagcgtTAAATAAAGCAGCGATGCACCCCACTCTATTTTGCCAGCTAAACCTTTAGTACCTGAGAAACTAGATGCGCTATAAAAAAAATTTGGTTAAAACTGTTCACTTGCAACCAACTTTTATCTGCTTTCATTTATCTGTGGAATTTGTTGATGAAATTTAAATGCATAAACTGTTGTTGTAGCTGAAGCTCTGTCAAATTGtttttctctggtctgaatctattatgtttgtaaatgttaaagttgtTTTCACTACCTGAGTGCAATTTCTGAATTCACACCCACCCAAACAAATCACACCAAGGGTGAAAATGAGACACAATCCAATTTAACTGGATAAGAAAATGCAGGcgtgaaagcacccttaattAAATGATAACACGGTGTTTTCTCATTGTTTTGATGCTCTTTGTATTAAGATCATagtatatagctctggaaaa
>XM_022680020.1
CAGCCAGACTGGAGATGAAGGACCCACTGGGAACTTGCACTCCTGCTGTACGAGGACCTCAAGAGATTCTCGAAAAATGGAGAGACTTTTTGCAAAGAACTTGTAACAGTTTTCCAGCAACGATCAGAGCTGGAGATCAACTATGCCAAAGGCCTGCAGAAGCTGGCAGGGAAACTCATCAAAGTATCCAAAgccatgagtaacaaCTCAACGTACAATGCCTGGTCTCTGGTGTCAAATGAGATGTTCTCCATAGCAGATGCTCACAGAATACTGGGACATGCTCTACAACAAGATACCGTTCTGGAGATCCGGCAGATCCTGGATGAACACACCAAAAGGAAGAAGCCaCTGGACAACACCATTGAAAAATCTGGAAAACTTGTCGTTACAAACTGGAATGAACAACTGAAGGTGAAGAAAAAGCTGAGTGCTTTAACCAGAGAACATGAGGCACTGTTCAGTTTTGTGGAAAAGAACAAACAGATAtgcacagagaaagagaagcaaAAGATGTTTAACAGACTGACTaagtcagcagagcttcaggtCAAGGTTGATGAGGAGTACTTCAATATGAACATGGACGGCCATAAGATGAGACTGAAGTGGGAGAACACACTGAAATCCTGCTATCAGatcatTCAAGAGCTGGAGAAGCAAAGGATAGAGACTCTGTGCAGCACACTAAATAAATATAGTCTCCACATGTCCAGCTATAGCCAAACTCTTCTTCAAAGTGAGAAACAGATCGAGGAGGCCATTGGTAGAGTGGATGTGGAGAAAGACCTCCAGACTCTGGTGGAAGACACCTGTGTTACTGCAGAAGATACAGAGGCTGAATTTCTGATGGCTGATTACTTTGAGGAGGATGGGAGGACAAtaatggggagagaaagaagacGAGACGCGTTAAAGATTAAACTTCAGCGACTGGAGGAATGGATCACAAGAACTAAGGAGGATAAagatgGACTGGAGAGAACAGCGATGTCCTCTGAAAGCACATCAGACCTCGGtcaaagaaacacagaggaaactgagcagATACTTGATGCGAACACTTTAAAACTGGATCTTTTGGAGGCCACACACTGCAAACTGAACCAAGCTTTGATGGATTTAGAGGGAAAACCAAGGCCTTTACATCGGTTTAGTAACAGCATCACGAAATTCAAAGATAAGgaCTGTGAGCACAGCACAGTCAAACTGTCACGACCAGTTAAGATCAAAAAGACACCACTCAGATCACGGCAGTCTTTGAGGACTTCAATCATGTATAAAGGCCCTGCTAAAAATGGAGCGTCCCGCCAGGACTCTGCTCCATCTACAGGGGCTGGCACTGCATCAGCACAACTCAGCCCCACAGAGCCTCAGAGAGCTGAGCTTAACGGAGCTCTGCCCCACTCTGAAGATGAAGCTGGCAAAGGTGCTGAGTTTTGCAGTATCGGTAAATGCAAGGCTTTATATGACTATTCATCTGAGAGAACTGACGAGTTAAACATTAAGGAAGGAGATCTTCTTAACATCCTTCAGAAGGATGATAGTGGGTGGTGGTTTGGAGAACTGAATGGGGAGAGAGGGCACTTTCCTTCCACATATATTGAGGAGCTGCCCATCTTAAACGTACCAAAGTCTTCTGATGCTTAACTCATGGAAAAGAtagatttttgtattattatattgtcaCGCTGAAGCACTTTGTATATGTGACCATATCAAAGCGTACACTTTGTTTAGGGaccttgattttatttttttaagcgtTAAATAAAGCAGCGATGCACCCCACTCTATTTTGCCAGCTAAACCTTTAGTACCTGAGAAACTAGATGCGCTATAAAAAAAATTTGGTTAAAACTGTTCACTTGCAACCAACTTTTATCTGCTTTCATTTATCTGTGGAATTTGTTGATGAAATTTAAATGCATAAACTGTTGTTGTAGCTGAAGCTCTGTCAAATTGtttttctctggtctgaatctattatgtttgtaaatgttaaagttgtTTTCACTACCTGAGTGCAATTTCTGAATTCACACCCACCCAAACAAATCACACCAAGGGTGAAAATGAGACACAATCCAATTTAACTGGATAAGAAAATGCAGGcgtgaaagcacccttaattAAATGATAACACGGTGTTTTCTCATTGTTTTGATGCTCTTTGTATTAAGATCATagtatatagctctggaaaa

Function

symbol description
nostrin Acts upstream of or within several processes, including glomerular epithelium development; regulation of filopodium assembly; and sprouting angiogenesis. Orthologous to human NOSTRIN (nitric oxide synthase trafficking).

NR:

description
nostrin

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0051489 regulation of filopodium assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222157 True 2777 lncRNA 0.35 6 131108 174925
XM_022680019.1 False 2383 mRNA 0.42 16 160759 173503
XM_022680020.1 False 2207 mRNA 0.42 16 160930 173503

Neighbor

gene id symbol gene type direction distance location
tanc1 tanc1,LOC108266469 coding downstream 9523 184448 ~ 366848 (+)
tank NA coding downstream 438165 613090 ~ 626626 (+)
tbr1 tbr1,LOC106511624 coding downstream 485676 660601 ~ 666804 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding downstream 500135 675060 ~ 750486 (+)
LOC103030276 LOC103030276 coding downstream 1544367 1719292 ~ 1724952 (+)
G164118 NA non-coding downstream 311009 485934 ~ 486739 (+)
G164123 rbms1,LOC108266580,LOC105908026 non-coding downstream 332920 507845 ~ 520172 (+)
G164194 NA non-coding downstream 527356 702281 ~ 716718 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding downstream 664956 839881 ~ 845477 (+)
G164276 NA non-coding downstream 769672 944597 ~ 944874 (+)
G164126 NA other downstream 363354 538279 ~ 572193 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other downstream 1229176 1404101 ~ 1496380 (+)
tspear tspear other downstream 1569481 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 1627862 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 2315119 2490044 ~ 2492991 (+)

Expression


Co-expression Network