G164123 (rbms1,LOC108266580,LOC105908026)


Basic Information

Item Value
gene id G164123
gene name rbms1,LOC108266580,LOC105908026
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 507845 ~ 520172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222233
TCATCATGGACGTTGGCTGCAGTGACATGGAGGGATCCATAGAGGGTGATATTACAGCTCCCGGATGTTGCATAATGTAGGGCTGGTGGGTGACCCAGGATGGATTTTGCACCGGGTATGTGGACACTTGGGAGAGGTATGGTGACATGGCCGTCTGCGGGATCAATCGGTTGGTAATGCTGTAGGGACTGGGGTAAAACCCATTCTGCATAGCTGCAGCAGTAGGGTCATATGTGAGCGTCATTCCCGCAAGTCTGGCCTCTCCATCTCTGGCCCACGCTCGGCCGTTCGGCACGTATTTATTTTGGCTCTGCCGCTTCTTCTGCCCTCCATCTGCAAACTTGCACAGCAGCGGCTCACTAGGGGCCATTACTCCAGCTGGCATCTTGAGAAACTTTCCATTGAAGTGAGAAATAACAGCGTCACATTTTTCTGTGGACTCCATTCTGGCAAATCCGACTCCTCGGCTAGCCCCGTTAGCGTCCCGGAGTATGCGTGTGGAGACCACCTGACCAAAGGGCTTCAGCATAGACTCCAGATCCTGCTCGTCCATAGTCAGTGGCAGGTTTGAAATGTACAGGTTAGTGGGG

Function

symbol description
rbms1 Enables RNA binding activity. Predicted to be involved in RNA processing. Located in cytosol.

NR:

description
PREDICTED: RNA-binding motif, single-stranded-interacting protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222233 True 590 lncRNA 0.53 7 507845 520172

Neighbor

gene id symbol gene type direction distance location
tanc1 tanc1,LOC108266469 coding upstream 140997 184448 ~ 366848 (+)
cers6 cers6,LOC107564136,LOC107677898 coding upstream 350791 105214 ~ 157054 (+)
tank NA coding downstream 92918 613090 ~ 626626 (+)
tbr1 tbr1,LOC106511624 coding downstream 140429 660601 ~ 666804 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding downstream 154888 675060 ~ 750486 (+)
LOC103030276 LOC103030276 coding downstream 1199120 1719292 ~ 1724952 (+)
LOC103029311 NA coding downstream 1255279 1775451 ~ 1783041 (+)
G164118 NA non-coding upstream 21106 485934 ~ 486739 (+)
G164194 NA non-coding downstream 182109 702281 ~ 716718 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding downstream 319709 839881 ~ 845477 (+)
G164276 NA non-coding downstream 424425 944597 ~ 944874 (+)
G164282 NA non-coding downstream 431893 952065 ~ 952429 (+)
G164284 NA non-coding downstream 469125 989297 ~ 989513 (+)
nostrin nostrin other upstream 332920 131108 ~ 174925 (+)
G164126 NA other downstream 18107 538279 ~ 572193 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other downstream 883929 1404101 ~ 1496380 (+)
tspear tspear other downstream 1224234 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 1282615 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 1969872 2490044 ~ 2492991 (+)

Expression


Co-expression Network