G164253 (kcnh7,LOC106917580,LOC103474219,LOC101482208)


Basic Information

Item Value
gene id G164253
gene name kcnh7,LOC106917580,LOC103474219,LOC101482208
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 839881 ~ 845477 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222402
AATTGCCACCACAACATCATCCTTCAGGATCTCGATAGAGCCTCGGGACAAGAAGTAGAGCGCTGTCAGGACATCTCCACTGTGGACGAGTGTGTCTCCTGGGGGAGCATGGGTGGTGTTGAAGCGCATGGCCAGGGCCCGCAGGCAGCCTTTAGTGGCCCCCCGGAATGCCTTACAGCCCTGCAGGAGGCTCTGATTTAGATGAAGACATATATCTGCCTGCAAGCATTCAGGAAAGCCCTTTAAAACCTCCGTGTTTAAGTCGATGCCATTAGTGTAGGTCCAGGAGTGCTGGAAGTACTCCTCCAGCCTCTGCCTGAGCGGGTTTGGTATTTGGTGGAAGCGGATAAACTCTTTCACCCGCAGCATCTGCATATGATAGCGTGCTGTTCCTGAGTACAGACGCTGAATGATGGCCGACACATTCCCAAAAATGCTGGCGTACATTAGGGCTGATCAGGGGAGATTTAGAAACAGGGATAGCAGAAATGTTATAACACTACATATGCAAATTTATGACACAAAAAAgttaacatgtaaaa

Function

symbol description
kcnh7 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human KCNH7 (potassium voltage-gated channel subfamily H member 7).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222402 True 542 lncRNA 0.49 2 839881 845477

Neighbor

gene id symbol gene type direction distance location
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 89395 675060 ~ 750486 (+)
tbr1 tbr1,LOC106511624 coding upstream 173077 660601 ~ 666804 (+)
tank NA coding upstream 213255 613090 ~ 626626 (+)
tanc1 tanc1,LOC108266469 coding upstream 473033 184448 ~ 366848 (+)
cers6 cers6,LOC107564136,LOC107677898 coding upstream 682827 105214 ~ 157054 (+)
LOC103030276 LOC103030276 coding downstream 873815 1719292 ~ 1724952 (+)
LOC103029311 NA coding downstream 929974 1775451 ~ 1783041 (+)
LOC103028997 NA coding downstream 938401 1783878 ~ 1796747 (+)
ehhadh NA coding downstream 960918 1806395 ~ 1822220 (+)
nup35 nup35,LOC106582498,LOC107749876 coding downstream 1025009 1870486 ~ 1878855 (+)
G164194 NA non-coding upstream 123163 702281 ~ 716718 (+)
G164123 rbms1,LOC108266580,LOC105908026 non-coding upstream 319709 507845 ~ 520172 (+)
G164118 NA non-coding upstream 353142 485934 ~ 486739 (+)
G164276 NA non-coding downstream 99120 944597 ~ 944874 (+)
G164282 NA non-coding downstream 106588 952065 ~ 952429 (+)
G164284 NA non-coding downstream 143820 989297 ~ 989513 (+)
G164376 NA non-coding downstream 861404 1706881 ~ 1708641 (+)
G164400 NA non-coding downstream 1030967 1876444 ~ 1877085 (+)
G164126 NA other upstream 267688 538279 ~ 572193 (+)
nostrin nostrin other upstream 664956 131108 ~ 174925 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other downstream 558624 1404101 ~ 1496380 (+)
tspear tspear other downstream 898929 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 957310 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 1644567 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 4422562 5268039 ~ 5298728 (+)

Expression


Co-expression Network