G54694


Basic Information

Item Value
gene id G54694
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 6957719 ~ 6957928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62246
GGCGCAACATATGATGTATAAATTTTAAATTAAAAACATTGCTGTTCACAGTTCACTGTATTAAAAAAAAAAAAAAAAAAAAAATCCAACTACTTCAACTTTAAAACTGTAGTTCAGTTGCTGCCTTACATTTTTAAGTATAGCCTAATCAAATTGGCTTGAATTAATTTAAACTCACTTTTTAAAAAAAAAAAATGAGTTGAATTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62246 True 210 lncRNA 0.24 1 6957719 6957928

Neighbor

gene id symbol gene type direction distance location
CI01000009_06943591_06952628 NA coding upstream 4652 6941624 ~ 6953067 (+)
CI01000009_06212264_06213131 NA coding upstream 743904 6212264 ~ 6213815 (+)
CI01000009_06205817_06207701 TEX30 coding upstream 750008 6205817 ~ 6207711 (+)
CI01000009_06195742_06204011 KDELC1 coding upstream 753370 6195742 ~ 6204349 (+)
CI01000009_06130188_06193279 STXBP5L coding upstream 764315 6130064 ~ 6193404 (+)
CI01000009_06975071_07009147 ARHGAP15 coding downstream 17143 6975071 ~ 7009417 (+)
CI01000009_07051811_07054331 NA coding downstream 92790 7050718 ~ 7054625 (+)
CI01000009_07091022_07092696 NA coding downstream 132990 7090918 ~ 7092801 (+)
CI01000009_07101768_07105835 NA coding downstream 143341 7101269 ~ 7106009 (+)
CI01000009_07111833_07115320 NA coding downstream 153794 7110351 ~ 7115443 (+)
G54687 NA non-coding upstream 11678 6945823 ~ 6946041 (+)
G54626 NA non-coding upstream 16927 6896121 ~ 6940792 (+)
G54627 NA non-coding upstream 44123 6805307 ~ 6913596 (+)
G54433 NA non-coding upstream 324941 6632544 ~ 6632778 (+)
G53903 NA non-coding upstream 380577 6576716 ~ 6577142 (+)
G54752 NA non-coding downstream 162567 7120495 ~ 7120779 (+)
G54779 NA non-coding downstream 198953 7156881 ~ 7157158 (+)
G54946 NA non-coding downstream 243762 7201690 ~ 7201927 (+)
G54952 NA non-coding downstream 253474 7211402 ~ 7211650 (+)
G53651 NA other upstream 709327 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 1024918 5931718 ~ 5943899 (+)
G53388 NA other upstream 1418665 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 3748735 3202207 ~ 3208984 (+)
G51529 NA other upstream 3895132 3062033 ~ 3062587 (+)
G56100 NA other downstream 2171372 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 2895431 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 4802858 11761606 ~ 11766944 (+)
G57811 NA other downstream 4976014 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 5474630 12432538 ~ 12436017 (+)

Expression


Co-expression Network