tspear (tspear)


Basic Information

Item Value
gene id tspear
gene name tspear
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1744406 ~ 1760560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222569
caggtGGCAGGGTTATGAGAGATTTGTTCCTGTTCACACTCTGAGCACTAACGGCTGCAGAGACTGGGAATTCTTCACTTCCTCAGACGGATCCTACCTCATCTCCTCCAGCGCTCGCCAGGCCCTGTCCAAAATCCTCAAACTCCGAACCTACCGTCAGCACTGACACCGTCCAGATACCACCACAACACTGACACCGCCCACAACACCGTCCAGATACCACCACAACACTGACACCGCCCACAACACCGTCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACGCCAGCCACAACACCGTCCAGATAACACCACAACACTGACACCATCCACCACACCAtccagataccacaacaacacTGACACCGCCCACAACACCGTCCAGATACCACC
>XM_022680046.1
tctctctctctctctctctctctctctctctttctctctctcactcgttctcCTCTACAGCTGTTTACAGGGAGTTTATCTCAGTCGGAGTTTAGTGAGTTCAGGTCAGTTTAACTCCTGACTATAGAATAATAGAATATAGAAAACATTAAcagataaattataaataaatatgttacaCTCCTGCCTGCTGCACTCTACTCAACACCTGGACATTTTTCTTCTGCAgtctagaatatatatttttaatgtttctagGAATTCTGGACCATAATATTGTACTAGATGTTACTGAAGCCTGATGGTTGTTTGAAACATTTTCTGAGCCTGATGGATGTTGTGGACATTATTGGAGCCTGGAGATGTTTTTGGATATATTTTTGAACAGACTCTAAAGGTTGCTCTGGACTTTATCAAAGCCTGAAATTTATTCTGGATGTTATTTGACCCTGGATGTCTTTGGAGCTTGAAAGCAGTTTTGGAGGTTTCTGGGCTCCCAATGCTGTTCTGGACATTATAAGAGTCAGTTCTGGATGTAtctagtgtttaaaaaaacgttCTGGATGTTACAGAAGTGTGATGAATCTATTGGACATTTTTGGACACTCAACAATGTTCTGGATGGTACTCTAGAATGAGTCTGAGAGTGGTATGAAGGTGCTGGGCTGGTATGAAgtatgctgatgctgctgcactTTAGGCTTCTACTCTGCTGCATCATCAGTGGCTGTTCTGCACTGTGGAGACCATGTACAGACCTGCTGCCGCTGGACCTGCTGAGGCGGGTGGTCCCGGCTGGGGGGGTGTATCAGAGCCGGGTGCGGTTGGTGCAGTCTCAGGGCTCTCGAGGGGTGAAGTTTACTGGACCCCCACAAGCCCTCAGCTTCCCTGCAGCTCCGCTCTTCACCAACTGCAACTACTTCCCCGCAGAGTTCTCCATCGTGGTCACCCTGAAGATCCCTCAGCTGCCCCCCTAACGTGAGAAACTaAAGGATGAGTATATCTTCACTCTGCTGGACGGAGGTTCGGACCGGTTGCTGTTGGGTTTGCGTCTCACCCGAGATAAACTGCACTTCCTGCTGCAGTCCCGTGGCACGACCCGGCGCGTGACCTTCAGGTCCGTTGGACTGGCAGACGGCCGCTGGCACACGCTGGTGCTGGCCGTCACTGGTCACTACACCATCCTCACTGTGGACTGTGGTATCCCCCTGGAGTTGCACACTCACAGAGCATTCCCCGAGGACTTAAACACTGAAGGCTCCGTCTTCTTCATCGGCAGCAGGAAGAGATGGAACGGGCTGTTCTCGggTTTGATAAGACAGCTGGTTCTGCTGCCAGGTTCTGATGCCTCCTCCCGGGTTTGTCCCTCCTCCCAGCCCCACCCTAAGCCTCACCAAGCCCCACCCTAAGCCTCACCAAGCCCCACCCTAAGCCTCACCAAGCCCCACCCTAAGCCTCACCAAgCGGAGGTTCGGGTGAGTCCTGTGAGTCCTCTCTGTCGGGTCAGTGAGGTGGGTCAGCTTTGGTTCAGCACTGAGGAGAAAGGCCTGTTCCTGTGTGATGGAAGCATGTGGATCACCATGCTGCAGGagcgagagaggctGGATTACGTGGAGGAGCATCAGGATCTCTTCACCACCTCCGAAACCTTCGACATCGAGGTCTTCAGCATCCCATCTGTGGGCCTCTTCATGGCTACAGCGAACCGTGACCTGGGCTCTACTGTGTACCGGTGGACGAATGGCAGGTTTGAGCGATACCAGGACTTCAGCACCCACGACGCTCAGGCATGGAAGTTCTTCACAGTGGGCAGAGAGaGTTTCCTGGTGGTGGCTAACTGGGGTGATGGGGTAGAGGAGGTGTCATTGGTCTATAGGTGGAGTAATCGGACGCTGAGGTTCGTGGCGTATCAGAAGCTGCACACCCACAGCGCTCGTGATTGGGAGGCCTTCCACATCCAGGGCGAGGCGTTCCTCGCTGTGGCCAATCACAGGCAAGGTAAGGCTCACCTGCATTAggAAATGAATCACAACATTGAGAGTGTGATCTACAAGTGGAACCCAAACACCAGGAAGTTTGAGGTGAATCAGACCATCGCTACGTCTGGAGCTTACGACTGGGAATTCTTCACCATCGGCCCGTACCACTTCCTGGTGGTGGCAAACACCTTTAATGGGAAATCCACCGTCATCAACTCCACCATCTATATCTCTGGGGGAAGCTTTCGGATTTTCCAGTCTATCCTGACCACCGGAGCGATAGACTGGGAGATGTTCCAGATCGGGAACAGGTTCTTCCTGGCTGTAGCGAACAGTCAGAGACTGGACAACACCGGCTCCATCCAATACAACATCAACTCCACCATCTATGAGCTCAACATGACCTCGCAGACCTTCATCAAGTTCCAGGACATCACCACTAGCAGTGCTCTGGACTGGGAGTTCTTCACTGTGGGGGATGATAAGTTCTTGGTGGTAGCGAACTCATATGATGGAAACTCCTACTCACTAAACAGTGTTATATACAGgtGGCAGGGTTATGAGAGATTTGTTCCTGTTCACACTCTGAGCACTAACGGCTGCAGAGACTGGGAATTCTTCACTTCCTCAGACGGATCCTACCTCATCTCCTCCAGCGCTCGCCAGGCCCTGTCCAAAATCCTCAAACTCCGAACCTACCGTCAGCACTGACACCGTCCAGATACCACCACAACACTGACACCGCCCACAACACCGTCCAGATACCACCACAACACTGACACCGCCCACAACACCGTCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACACCACCCACAACACCGTCCAGATACCACCACAACACTGACACCATCCACCACACCATCCAGATACCACCACAACACTGACACCGCCTACAACACCATCCAGATACCACCACAACACTGACGCCAGCCACAACACCGTCCAGATAACACCACAACACTGACACCATCCACCACACCAtccagataccacaacaacacTGACACCGCCCACAACACCGTCCAGATACCACCACAACA

Function

symbol description
tspear Involved in regulation of Notch signaling pathway and tooth mineralization. Acts upstream of or within sensory perception of sound. Predicted to be located in cell surface and stereocilium. Implicated in autosomal recessive nonsyndromic deafness 98 and ectodermal dysplasia 14.

NR:

description
PREDICTED: thrombospondin-type laminin G domain and EAR repeat-containing protein, partial

GO: NA

KEGG:

id description
K24437 TSEAR; thrombospondin-type laminin G domain and EAR repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU222569 False 464 lncRNA 0.55 2 1759931 1760554
XM_022680046.1 True 3154 mRNA 0.52 15 1744406 1760560

Neighbor

gene id symbol gene type direction distance location
LOC103030276 LOC103030276 coding upstream 19454 1719292 ~ 1724952 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 993920 675060 ~ 750486 (+)
tbr1 tbr1,LOC106511624 coding upstream 1077602 660601 ~ 666804 (+)
tank NA coding upstream 1117780 613090 ~ 626626 (+)
tanc1 tanc1,LOC108266469 coding upstream 1377558 184448 ~ 366848 (+)
LOC103029311 NA coding downstream 14891 1775451 ~ 1783041 (+)
LOC103028997 NA coding downstream 23318 1783878 ~ 1796747 (+)
ehhadh NA coding downstream 45835 1806395 ~ 1822220 (+)
nup35 nup35,LOC106582498,LOC107749876 coding downstream 109926 1870486 ~ 1878855 (+)
LOC111194854 NA coding downstream 119588 1880148 ~ 1882693 (+)
G164376 NA non-coding upstream 35765 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 754893 989297 ~ 989513 (+)
G164282 NA non-coding upstream 791977 952065 ~ 952429 (+)
G164276 NA non-coding upstream 799532 944597 ~ 944874 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding upstream 898929 839881 ~ 845477 (+)
G164400 NA non-coding downstream 115884 1876444 ~ 1877085 (+)
G164404 NA non-coding downstream 142506 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 355283 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 418542 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 432255 2192815 ~ 2193188 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 248026 1404101 ~ 1496380 (+)
G164126 NA other upstream 1172213 538279 ~ 572193 (+)
nostrin nostrin other upstream 1569481 131108 ~ 174925 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 42227 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 729484 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3507479 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4356804 6117364 ~ 6123051 (+)
G165406 NA other downstream 4384377 6144937 ~ 6145969 (+)

Expression


Co-expression Network