LOC103028062 (cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986)


Basic Information

Item Value
gene id LOC103028062
gene name cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1802787 ~ 1838087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222579
tcacAATGCTGTGTGAATACTGGAATCTAAGCGTATTCGATTATTTGCACTGTTCGATCcgtaaaaaaaaccaaaaagaaGGATGACCACTCAGAGCTCCACTGTCATGGTTGCAGACCCAAGACATGAACTTCAACACTGCAGCAGAacggaaataaagaaaatatatggcATTTCCTGTCCTGCTAACAAAACTGAGAAGACAAAAGATGAATCAGATTTGGTGTGAAGTTTCactaagtaaaaaaacacactctGTAATGCTCTGTACTGTTCATATGATTCACACTCTTATTCTGACAAACTGTAATACACTGCAAGAAGCCTAGGGGGCACTATACAATGCTATATAgagttcatatgatccacacacaaattctgacagattgtaatacactacagaaagtatatggggcgctctataatgctccataatgttcatataatccacatgctcattctgacagattgtAATACACGACAGAAAGTATAGGGGGGGctctataatgctctataatgctccaTAATGTTCATATAATCCACACACTAATTCTGATAAACTGTAATTCACTGCAGAAAGCATAgagggcactctataatgctctataatgttcacaTGATCCACACATTCATTCTGacaaactgtaatacactacaggaagtatagggggagctctataatgctgtataatgtTCACatgatccacacactcattctgataaactgtaatacactacaggaagtatagggggagctctataatgctgtataatgtTCACATGATCCACACATTCATTCTGacaaactgtaatacactacaggaagtatagggggagctctataatactgtataatgttcACATAATCCACATGTTCATTCTGATAAACTGTAGTTTACTACAGGAAGactagggggcgctctataatgctctataatgttcacatgatccacacactcactctgatAAAcggtaatacactacaggaaccCTCGGTGTGGAAATAGTGATCAGTTGCAGCCCTAAATACAAAAcagcattttctctctctctggctggtTTTGGACACATTGGATTGttgaattctgaattatttgaCAGGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAGCCTATAACCAGGCTGCATCACTGCACATCAAAcgtagtaaaagcagtagtattattcAGTTTATTATCATCACTTCTGTCTGTTTCCATATCCTTAAAGGAGACCTAGGAAGACTCCACTGCTGACACTTCAAATATGAGAAACTTGGAGCAATTTGCCAAAGAAGAGTGGTACAAAATTACATTTGAGATGTTTAAGAAGCTTGTCGATGGTTTTAGGAAGTGATcgatttattagttttttttccccaaagggtgtgcaaccaaatataatataatatattacaatatttgtgtgttgttgcaatacacacataatatatgtgtgtaatgAACTTGCAATAATTGTTTGGTAGAAATACTAAtttatcagttaaaaaaaagcttcacaAAAACCTTCTGACcttatttttgttcttaaaatGGACCATTTcccttctcttttttatataattttctacCAATTTACaattggccaattacccaacttactcattaggactccccctatcactaataatgctccaacaccaggagggtgaagaacagcatatgcctcctctgatacatgtgaagtcagactccgcctcttttcggaggaaagcgcagcgacacggttctgatacatcagctcacagacgcaaccttgtgctgatccacatcaccctaggagtgatcaggggaaagagtgccatctaccgtatccacccagagagagagcaagaccaattgtgcactctcagggctccagcagccgatggcaagctgcatgaccatgATTCGAACCAGAGATCAaacctcctgatcatagtggcagcaccatagtctgctggaccactcgaagcCCCCGTTTCCCTTCTTTAAATCAAATCAGTAATGTCTGATTCgcgtaaaaaaaaattaatacacaAATACTCTAATGTACAACTCTGTTAtggtttaaaagtgtttaaaagccAAGGTTCTAAGTGGTTCTGTGTGGTTTCTGAGGACTTTAGGGATAAAATATGAAGCAGATTCCAGGGTAACTgagtaaatctgattaaatgCTGATCTGTTTTTATTCTGAGAGTTGTTTCTGTGTGGAGTTGAGTTCTATAGTAAGAGTACTCTGCTGAAAAACTGCTTCTCACTGTGTCTTTCAGTAAAGAGGATTAATGATtaccaacacacacattcacacacctcACTGTCACTCTGCAGTGTTCACTCTGAATCactctttattataataatctcactctttctctcattttcttatAAAGACCTGAACTGTTCACCTTCTTCTGTGCTGGTCTTTTCTCAGagtttgtgtttattatgaCGCTGATATTG
>TU222580
aatacactacagaaagtatatggggcgctctataatgctccataatgttcatataatccacatgctcattctgacagattgtAATACACGACAGAAAGTATAgggggagctctataatgctctataatgttcatatgattcacacattcattttgacagactgtaatacactacaggaaccCTCGGTGTGGAAATAGTGATCAGTTGCAGCCCTAAATACAAAAcagcattttctctctctctggctggtTTTGGACACATTGGATTGttgaattctgaattatttgaCAGGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAGCCTATAACCAGGCTGCATCACTGCACATCAAAcgtagtaaaagcagtagtattattcAGTTTATTATCATCACTTCTGTCTGTTTCCATATCCTTAAAGGAGACCTAGGAAGACTCCACTGCTGACACTTCAAATATGAGAAACTTGGAGCAATTTGCCAAAGAAGAGTGGTACAAAATTACATTTGAGATGTTTAAGAAGCTTGTCGATGGTTTTAGGAAGTGATcgatttattagttttttttccccaaagggtgtgcaaccaaatataatataatatattacaatatttgtgtgttgttgcaatacacacataatatatgtgtgtaatgAACTTGCAATAATTGTTTGGTAGAAATACTAAtttatcagttaaaaaaaagcttcacaAAAACCTTCTGACcttatttttgttcttaaaatGGACCATTTcccttctcttttttatataattttctacCAATTTACaattggccaattacccaacttactcattaggactccccctatcactaataatgctccaacaccaggagggtgaagaacagcatatgcctcctctgatacatgtgaagtcagactccgcctcttttcggaggaaagcgcagcgacacggttctgatacatcagctcacagacgcaaccttgtgctgatccacatcaccctaggagtgatcaggggaaagagtgccatctaccgtatccacccagagagagagcaagaccaattgtgcactctcagggctccagcagccgatggcaagctgcatgaccatgATTCGAACCAGAGATCAaacctcctgatcatagtggcagcaccatagtctgctggaccactcgaagcCCCCGTTTCCCTTCTTTAAATCAAATCAGTAATGTCTGATTCgcgtaaaaaaaaattaatacacaAATACTCTAATGTACAACTCTGTTAtggtttaaaagtgtttaaaagccAAGGTTCTAAGTGGTTCTGTGTGGTTTCTGAGGACTTTAGGGATAAAATATGAAGCAGATTCCAGGGTAACTgagtaaatctgattaaatgCTGATCTGTTTTTATTCTGAGAGTTGTTTCTGTGTGGAGTTGAGTTCTATAGTAAGAGTACTCTGCTGAAAAACTGCTTCTCACTGTGTCTTTCAGTAAAGAGGATTAATGATtaccaacacacacattcacacacctcACTGTCACTCTGCAGTGTTCACTCTGAATCactctttattataataatctcactctttctctcattttcttatAAAGACCTGAACTGTTCACCTTCTTCTGTGCTGGTCTTTTCTCAGagtttgtgtttattatgaCGCTGATATTG
>TU222581
tcacAATGCTGTGTGAATACTGGAATCTAAGCGTATTCGATTATTTGCACTGTTCGATCcgtaaaaaaaaccaaaaagaaGGATGACCACTCAGAGCTCCACTGTCATGGTTGCAGACCCAAGACATGAACTTCAACACTGCAGCAGAacggaaataaagaaaatatatggcATTTCCTGTCCTGCTAACAAAACTGAGAAGACAAAAGATGAATCAGATTTGGTGTGAAGTTTCactaagtaaaaaaacacactctGTAATGCTCTGTACTGTTCATATGATTCACACTCTTATTCTGACAAACTGTAATACACTGCAAGAAGCCTAGGGGGCACTATACAATGCTATATAgagttcatatgatccacacacaaattctgacagattgtaatacactacagaaagtatatggggcgctctataatgctccataatgttcatataatccacatgctcattctgacagattgtAATACACGACAGAAAGTATAGGGGGGGctctataatgctctataatgctccaTAATGTTCATATAATCCACACACTAATTCTGATAAACTGTAATTCACTGCAGAAATCATAgagggcactctataatgctctataatgttcacatgatccacacactcattctgataaactgtaatacactacaggaagtatagggggagctctataatgctgtataatgtTCACATGATCCACACATTCATTCTGacaaactgtaatacactacaggaagtatagggggagctctataatactgtataatgttcACATAATCCACATGTTCATTCTGATAAACTGTAGTTTACTACAGGAAGactagggggcgctctataatgctctataatgttcacatgatccacacactcactctgatAAAcggtaatacactacaggaaccCTCGGTGTGGAAATAGTGATCAGTTGCAGCCCTAAATACAAAAcagcattttctctctctctggctggtTTTGGACACATTGGATTGttgaattctgaattatttgaCAGGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAGCCTATAACCAGGCTGCATCACTGCACATCAAAcgtagtaaaagcagtagtattattcAGTTTATTATCATCACTTCTGTCTGTTTCCATATCCTTAAAGGAGACCTAGGAAGACTCCACTGCTGACACTTCAAATATGAGAAACTTGGAGCAATTTGCCAAAGAAGAGTGGTACAAAATTACATTTGAGATGTTTAAGAAGCTTGTCGATGGTTTTAGGAAGTGATcgatttattagttttttttccccaaagggtgtgcaaccaaatataatataatatattacaatatttgtgtgttgttgcaatacacacataatatatgtgtgtaatgAACTTGCAATAATTGTTTGGTAGAAATACTAAtttatcagttaaaaaaaagcttcacaAAAACCTTCTGACcttatttttgttcttaaaatGGACCATTTcccttctcttttttatataattttctacCAATTTACaattggccaattacccaacttactcattaggactccccctatcactaataatgctccaacaccaggagggtgaagaacagcatatgcctcctctgatacatgtgaagtcagactccgcctcttttcggaggaaagcgcagcgacacggttctgatacatcagctcacagacgcaaccttgtgctgatccacatcaccctaggagtgatcaggggaaagagtgccatctaccgtatccacccagagagagagcaagaccaattgtgcactctcagggctccagcagccgatggcaagctgcatgaccatgATTCGAACCAGAGATCAaacctcctgatcatagtggcagcaccatagtctgctggaccactcgaagcCCCCGTTTCCCTTCTTTAAATCAAATCAGTAATGTCTGATTCgcgtaaaaaaaaattaatacacaAATACTCTAATGTACAACTCTGTTAtggtttaaaagtgtttaaaagccAAGGTTCTAAGTGGTTCTGTGTGGTTTCTGAGGACTTTAGGGATAAAATATGAAGCAGATTCCAGGGTAACTgagtaaatctgattaaatgCTGATCTGTTTTTATTCTGAGAGTTGTTTCTGTGTGGAGTTGAGTTCTATAGTAAGAGTACTCTGCTGAAAAACTGCTTCTCACTGTGTCTTTCAGTAAAGAGGATTAATGATtaccaacacacacattcacacacctcACTGTCACTCTGCAGTGTTCACTCTGAATCactctttattataataatctcactctttctctcattttcttatAAAGACCTGAACTGTTCACCTTCTTCTGTGCTGGTCTTTTCTCAGagtttgtgtttattatgaCGCTGATATTG
>TU222588
GCTCGGAGCGGCAGGTGATGGGAGAGAGCGCGCGCGTGCGGGTGAGGTAGACGGGGTGATGGtgaaggtgatgatgatgatgggctCCGGGATGAAGATGAAAAAGGATGAAGCGCAGGCTCTGGCGCGGAGCTGCGCGAGCAGACCGGATTTTCTCCCGTGCGACGGATCGGTGTGCCCCACGCACACGCACGGCAAGTGCTTCAGACTGCACTGGTGCTGCCACCTGGGCTGGTGCCACTGTAAATACGTCTACCAGCCCATGACGAGCGTGGGTCAGTTACCCAGCACCGCCATCCCCGCTGCTCCGTCATTTTACACGGACACCATCGATCTGTCCATCTCTCTGACCGAACGTTTCCTGCGCATCGCTCCCTGCTTCAGACCGCCCCTCTACCCAGAATACCCCCGGTACTGCAACATCGCCGAGCTCTTCATAGACGACTACATCGTCAAACGCATCAACGGCAAGATGTGCTACGTTCAGAGGCCGGTCCCTCAGATggaagccccgcccactcctcatccacatgctca
>XM_022680650.1
AGCGGGGCGCGCGGGCAGTGCCGGTGCAGGGCTCGGAGCGGCAGGTGATGGGAGAGAGCGCGCGCGTGCGGGTGAGGTAGACGGGGTGATGGtgaaggtgatgatgatgatgggctCCGGGATGAAGATGAAAAAGGATGAAGCGCAGGCTCTGGCGCGGAGCTGCGCGAGCAGACCGGATTTTCTCCCGTGCGACGGATCGGTGTGCCCCACGCACACGCACGGCAAGTGCTTCAGACTGCACTGGTGCTGCCACCTGGGCTGGTGCCACTGTAAATACGTCTACCAGCCCATGACGAGCGTGGGTCAGTTACCCAGCACCGCCATCCCCGCTGCTCCGTCATTTTACACGGACACCATCGATCTGTCCATCTCTCTGACCGAACGTTTCCTGCGCATCGCTCCCTGCTTCAGACCGCCCCTCTACCCAGAATACCCCCGGTACTGCAACATCGCCGAGCTCTTCATAGACGACTACATCGTCAAACGCATCAACGGCAAGATGTGCTACGTTCAGAGGCCGGTCCCTCAGATggaagccccgcccactcctcatccacGTCTGATCTCGGGAACTCTCACAGGTCGTCTCACAGTTTCTTCCACTGTGTATATTAAAACGTTACCTAGAACACATAAACAGATTCTGGTTTACGTCACCACAACCCTCACCATGTCTAAAACACTCACAAACAAGCACTAG

Function

symbol description
zgc:162707 Involved in circadian behavior and nervous system development. Orthologous to human C3orf70 (chromosome 3 open reading frame 70).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222579 True 2578 lncRNA 0.39 4 1802787 1838087
TU222580 False 1768 TUCP 0.39 2 1834813 1838087
TU222581 False 2496 lncRNA 0.39 4 1802787 1838087
TU222588 False 537 TUCP 0.60 2 1822868 1834634
XM_022680650.1 False 703 mRNA 0.58 3 1822838 1836753

Neighbor

gene id symbol gene type direction distance location
LOC103028997 NA coding upstream 6040 1783878 ~ 1796747 (+)
LOC103029311 NA coding upstream 19746 1775451 ~ 1783041 (+)
LOC103030276 LOC103030276 coding upstream 77835 1719292 ~ 1724952 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 1052301 675060 ~ 750486 (+)
tbr1 tbr1,LOC106511624 coding upstream 1135983 660601 ~ 666804 (+)
nup35 nup35,LOC106582498,LOC107749876 coding downstream 32399 1870486 ~ 1878855 (+)
LOC111194854 NA coding downstream 42061 1880148 ~ 1882693 (+)
znf804a znf804a coding downstream 255262 2093349 ~ 2191914 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 602569 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 765971 2604058 ~ 2655714 (+)
G164376 NA non-coding upstream 94146 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 813274 989297 ~ 989513 (+)
G164282 NA non-coding upstream 850358 952065 ~ 952429 (+)
G164276 NA non-coding upstream 857913 944597 ~ 944874 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding upstream 957310 839881 ~ 845477 (+)
G164400 NA non-coding downstream 38357 1876444 ~ 1877085 (+)
G164404 NA non-coding downstream 64979 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 277756 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 341015 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 354728 2192815 ~ 2193188 (+)
tspear tspear other upstream 42227 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 306407 1404101 ~ 1496380 (+)
G164126 NA other upstream 1230594 538279 ~ 572193 (+)
nostrin nostrin other upstream 1627862 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 651957 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3429952 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4279277 6117364 ~ 6123051 (+)
G165406 NA other downstream 4306850 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 4322313 6160400 ~ 6237986 (+)

Expression


Co-expression Network