G164400


Basic Information

Item Value
gene id G164400
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1876444 ~ 1877085 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222597
AAATAAAATGTCCTATAGCTTCAGTTCCTCAGAGTgggattaaaggagaaatctgatgtgtaatggacttgggttgtaatGAAACTTGATAACGAGTAGTTCATCCCCAAGGttctgaaatacagagcttttagccaatgctcctaAGAAGTTTACAATGGTAGTGATGGGGGCATAGAGTTGCCCATGctaaaaaatctgtttctccaCAGCTCCACATTTCATTGGTAAAATTCTGagggctctgacatttaaaatgaggcactgagaactttaaaaagtttattaaaaacactgtttatacacacactacctTCTGGTAGTTCTCTGACTCTGCTATCTTGACATTTAGTCACGACAAGTCGACTTATGAACGCAAACATAAAGGTAAAAAAGTAACACATTGCAGACTTTAATCTGTGGAAATGCACCAAATCCAGctattgctgaaaatatcttatataatattcattcatgcattttccacagaattaattttgcaatctgtagAACTACCTgaatgtactgtgtgtgtgtgtataaacagtgtttttaatacactatctgtgcacttttaaagctctcagtgcctcgttttaaatgtcagggctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222597 True 613 lncRNA 0.37 2 1876444 1877085

Neighbor

gene id symbol gene type direction distance location
ehhadh NA coding upstream 54224 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 79697 1783878 ~ 1796747 (+)
LOC103029311 NA coding upstream 93403 1775451 ~ 1783041 (+)
LOC103030276 LOC103030276 coding upstream 151492 1719292 ~ 1724952 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 1125958 675060 ~ 750486 (+)
LOC111194854 NA coding downstream 3063 1880148 ~ 1882693 (+)
znf804a znf804a coding downstream 216264 2093349 ~ 2191914 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 563571 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 726973 2604058 ~ 2655714 (+)
map2 map2 coding downstream 783370 2660455 ~ 2875066 (+)
G164376 NA non-coding upstream 167803 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 886931 989297 ~ 989513 (+)
G164282 NA non-coding upstream 924015 952065 ~ 952429 (+)
G164276 NA non-coding upstream 931570 944597 ~ 944874 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding upstream 1030967 839881 ~ 845477 (+)
G164404 NA non-coding downstream 25981 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 238758 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 302017 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 315730 2192815 ~ 2193188 (+)
G164498 NA non-coding downstream 350461 2227546 ~ 2227792 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 38357 1802787 ~ 1838087 (+)
tspear tspear other upstream 115884 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 380064 1404101 ~ 1496380 (+)
G164126 NA other upstream 1304251 538279 ~ 572193 (+)
nostrin nostrin other upstream 1701519 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 612959 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3390954 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4240279 6117364 ~ 6123051 (+)
G165406 NA other downstream 4267852 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 4283315 6160400 ~ 6237986 (+)

Expression


Co-expression Network