G164475


Basic Information

Item Value
gene id G164475
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2115843 ~ 2118502 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222720
ttgaggcGATCAGAAACAGCAGATCCGATCAGCTTTTTACCGTATCAGCCGCGAGTGCTACAGCAGGGCTGACCACACATTCATTATTAATCAGAGTGCCCGGCTCAGCCAGAAACAGGAGGAGATGCTATCTGCTGCCACACTGAAGAGCCCAAAACAACGGCAGATCAGACTGGAGGCTAATCTGACAGGCTGAGGACACTGAGTCTGATCCGTCTGATCTGTCAAAACAAACCAGACATCAAATGTAATAAAGTGAGAGTTATGCTTCTATTTAGAACCAGtacaacaaaaatgtttattttttatatatacatttctttgcATTGGGATTGGTTGAACCTGAGTGGTCCTTCTTGGGTCTGGTGAGTCTGTGCACGTCACAAAAGAAGAGGGTTAGGTGGGTCTAGGTGGAATTGAGTAGGGTTTGATTATACTGGGTTGGTCTTGGTGCTTGTGGGTATGTCTGGATGGTACCTGGAATTGGTTAGAAGTGGGTAGTCTAGTTTGGCTGGAATTGGATGGTTCTGGTTGATTCTGActgatttggaaaaaaaactgaatttggaTTAGGTGGTCCTGGTTAGAAATTGATTGTGTTTGAAGGGTCTGGGTAGTCCTTGATGGTAATAGTTGGGATTGAGTAGACCTTAGTGGCATTGGGTAGGTCTGGGTAGGCCTTGATGGTAATAGTTGGGCCTAGGTAGGCCTTAATGGCATTGGATGGAATTGGATAGGCTTTGATGGTAATGCATGGGTCTAGGTAAGCTTTGATGGCATTGGGTTGGTCAAGATAGGCCTTGATGGTAATATGGTAATAGTTGGGCCAGGGTACACCTTGATGCCATTAGGTAGGTCTGGGTAGGCCTAGATGGATAATGGTTGGGCCTAAATAGGCTTTAATGGTAATGCATGGGTCTAGATCAGCTGTGATGGTAATGGTTGGGCCTGAGTAGGCCTTAATGATATTGGATGGGTTTGGATAGGCTTTGATGGTAATGCATGGGTCTAGGTAAGCTTTGATGGCATTGGGTTGGTCGAGATAGGCCTTGATGTTAATAGTTGAGCCAGGGTACACCTTGATGGCATTAGGTAGGTCTGGGTAGGCCTAGATGGATAATGGCTGGGCTTGGATAGCTTTAATGGTAATGCATGGGTCTAGAAAAGCTTTGATGGTAATGGTTGGGCAAGGGTTGGCCTTGATGGCATTGAATGGGTCTGGAGAGGCTTTGACAGTTATACATGGGTCTAGATAAGATTAATGGCATTGGGCAGATCTAGATAGGCCTTGGTGGCATTTCGTGGATAGGCCTTGATGGTAATAGTTGAGCCAGGGTAGGCCTTGATGGCATTGGGTGGGTCTGGGTAGACCTTGATGGAACTCAGTGGGTCTAGGTAGACCTTGAAAGTTATGGTTTGGCATGGAATGGTAATGGTTGGGCCTAGGAAGGCCTTAATAGTACTGGTGGGGCATAGATGGAAATAAGTGTGCCTGGGTAAGAATGTGTTGGATTGGCTGGGCTTGGTTATGATTGGTTGGCACCAAATGGAATCTAGTTAGAAATTGAATTGACGGAACTGATATTTGAACACAGTCATCTTCTGAATGTGAACTGTGCACCAGCAACCTGTGAGTCTGCATTGtaggggtttctgataaagtggccagcgaggATAGGTACATGTGAAAGGTGTTGCTGGCGCTGGTCCAGGCCCTGTGTTCCCCTTCGGTGCTGGCGGAGGCTCTGGAGCCCAACCCTAACACACTTCATctctgaggaacagcagcaatAAACAGCAATGAACTCTCCCAGCCTTAAactcacacacataaaaacagagCCGGGTAATAAAGCGGCCAGCTGAGCGGGTCCGGGATTATGAGgcagagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgttgaATACAAAAACACTGAAGTGAAGCACAGTAGCTGAATGTGTGTGTCATAAAAGCAGAACAGCGTCTCTAAATCAGCTCATAACCTTAAACCCTCCCTCCTCACTCCACTGAGTGTTTAAagcgagagaaaagagagagagagagagagagagagagagagagagacagacagagaaagagagagagataccatCAGACTCTCAGCcagacactctctctctctcagagctctACACACAGCTGATCCCAGACTGATACACACTCAGCACCGGCCCTCTGTCTCTCATTAAAGCTGAAGATGCATAgagatgccaaaagtcatgggacaacagTATGTATGTTGATGATGAAGTTTTACCTTCTACCAATTATGAAATATTATCctgtgaatgaaaaaaaaaaaacactggtctGCGAGTTCATGCCAAAGCAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222720 True 2365 lncRNA 0.46 2 2115843 2118502

Neighbor

gene id symbol gene type direction distance location
LOC111194854 NA coding upstream 233150 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 236988 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 293623 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 319096 1783878 ~ 1796747 (+)
LOC103029311 NA coding upstream 332802 1775451 ~ 1783041 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 322154 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 485556 2604058 ~ 2655714 (+)
map2 map2 coding downstream 541953 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 793505 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1921484 4039986 ~ 4043593 (+)
G164404 NA non-coding upstream 208970 1903066 ~ 1906873 (+)
G164400 NA non-coding upstream 238758 1876444 ~ 1877085 (+)
G164376 NA non-coding upstream 407202 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 1126330 989297 ~ 989513 (+)
G164282 NA non-coding upstream 1163414 952065 ~ 952429 (+)
G164479 NA non-coding downstream 60600 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 74313 2192815 ~ 2193188 (+)
G164498 NA non-coding downstream 109044 2227546 ~ 2227792 (+)
G164501 NA non-coding downstream 178031 2296533 ~ 2296987 (+)
G164510 NA non-coding downstream 252694 2371196 ~ 2371425 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 277756 1802787 ~ 1838087 (+)
tspear tspear other upstream 355283 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 619463 1404101 ~ 1496380 (+)
G164126 NA other upstream 1543650 538279 ~ 572193 (+)
nostrin nostrin other upstream 1940918 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 371542 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3149537 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3998862 6117364 ~ 6123051 (+)
G165406 NA other downstream 4026435 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 4041898 6160400 ~ 6237986 (+)

Expression


Co-expression Network