G164479


Basic Information

Item Value
gene id G164479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2179102 ~ 2180592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222725
TTAGTAGAGTGTGTTGAACTGCTGGTACAGTACGAGTAgatcagcactgctgtatccgATCCAccccacccaaataataaacGTAGCTGCTTTATGGTGTTTTTTCTATgctgtggggttctgagtattgaagaacaacAGGGTGAAATGAGGAGAATATTAAcagatacagagaaacagacacagaactacagtctgtaactattatagaactacaaaatgattctgtatgatacaatatggagATGCTAAAATGACTTAAATTGACTTTACTTTATTCATCTCCAATATGGAAATTCGTCCATTTGTCCAGCTGCAAACATGTACAAAAGAAAACTGCACAAAAGTGTATATCACAGAACACAAGACAACTACTCATAACACTAATGCCCGGATCAGACTACACGATTTTGACCCGATTTTGACCCGATTTTGTCGGCGCCGACACATTGCGTGTGTCGGATCCGAAGGTCCGTGTAGTGAGACACAGTCAAAGAGCAGTAATGTGACGTGAGCGACGCCGTCGGAACGTCCGATGGAAAGATTAGCATGTtggaattttttgtattttatcgcctagtttgacaCATGCTGCTCCGCGACCTgctccctgactctgaccaataggaagacagagcaTTCTGTGGCGCACAGATTTAAACACGGAAAAAGAAAGCAGGACGGTGCTCCTGCAGTTcactggaccagagaaacaataatctaataatcatctaataatctacttcatccattaaatattctgtttacaggtactgaaacctaagtagctacatctttaccataccttaagttctctctggagtacacgaagcatgtaatgtccatttgggtcacccaggaacCCAGGAATGAGCCCACAGTcgcttttccctctttttttagtttttttcagcaCAAAAGCGCTACCATCACACAAAGGGCTTCTTTAGCCATGATTGTCAGATTCTATGCTTCTCCCCCGcgatgacctacgaactcacGCGAGGACGCGGacgatgattggtcggtgactaacctgtagtgttgccagtcctCAGAGAACGACGCAAAACGAAAAtgactgcttaatctgacatagtgaacattgtgagggacaaaaatgtggtgtagtctgagcttggcattaaACACATAGTAATAACGGAGTACACAGTCAATAGCCGATGCTATACAGTCCTATAGAATTAACAGTGAGCATAGAACCAATAGgtattcataatgttttgacTGTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222725 True 1255 lncRNA 0.42 2 2179102 2180592

Neighbor

gene id symbol gene type direction distance location
LOC111194854 NA coding upstream 296409 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 300247 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 356882 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 382355 1783878 ~ 1796747 (+)
LOC103029311 NA coding upstream 396061 1775451 ~ 1783041 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 260064 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 423466 2604058 ~ 2655714 (+)
map2 map2 coding downstream 479863 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 731415 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1859394 4039986 ~ 4043593 (+)
G164475 NA non-coding upstream 60600 2115843 ~ 2118502 (+)
G164404 NA non-coding upstream 272229 1903066 ~ 1906873 (+)
G164400 NA non-coding upstream 302017 1876444 ~ 1877085 (+)
G164376 NA non-coding upstream 470461 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 1189589 989297 ~ 989513 (+)
G164467 NA non-coding downstream 12223 2192815 ~ 2193188 (+)
G164498 NA non-coding downstream 46954 2227546 ~ 2227792 (+)
G164501 NA non-coding downstream 115941 2296533 ~ 2296987 (+)
G164510 NA non-coding downstream 190604 2371196 ~ 2371425 (+)
G164505 NA non-coding downstream 208036 2388628 ~ 2389777 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 341015 1802787 ~ 1838087 (+)
tspear tspear other upstream 418542 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 682722 1404101 ~ 1496380 (+)
G164126 NA other upstream 1606909 538279 ~ 572193 (+)
nostrin nostrin other upstream 2004177 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 309452 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3087447 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3936772 6117364 ~ 6123051 (+)
G165406 NA other downstream 3964345 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3979808 6160400 ~ 6237986 (+)

Expression


Co-expression Network