G164516


Basic Information

Item Value
gene id G164516
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2398876 ~ 2402019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222778
attttttttgtctcttttgaatttgcaacctACAATTTTCCTTTcgattcttacattttttaatttatttgtgtacttttggcacaaaaaatttactccagaaaaaaaaaaaaaaaaaaacatgctactGCTGCTACTCACCGCTGGCAGaggcttcttcttctttgcaCAATTGATGCCCCCAATCGTCACCATGTTGGGCATTATGGGTCTCGGGTACTCAAAAACGAAGTCATACCTCATTAGCCAAATCGCACCGTGACTGAGAACCTCTTTGAAGCTGGTGTCCCTCTGAAGATATTTGCTGACCAGTTTATCAGAACTGTCATAAATATACCAGCATAGGATCGACTCAAATCCCATCATTAAGATGTTCTTCACCCTCTGAGGGAAGGTCATAACGTCACTGTTCCTCGACAAAAAGCGAGGGACGTAGGAAGGTAGTGAGAGGCACTGGGCTGCTAATTGCTCCAGACCGCAGGGCATCGCACGCAGGAGGAAGACGACGGGAATCGAGAATGCCTCAGCAATGATGGGACCACAGGGCTGGACTGGGTCGGTCAGCATGAGGTCAAAACCTCGTTCCTTCAGGCTCTTCATCACAGGTTCATCATATAGCAGCTTCTCACAGCCTCTCAGTTGCATCTCGTTGAAGCTCAGAAGCCGGTCGATGCCCTCAAAGATGTTGGAAAGCTTCTTCGTCATCCTGTGCTTAAACCTGTCGATGTGGGCGTCCATTTGGGCCTGGCTGTAGGGCACTTTAAAGGTCTGGGTGGTGTACTTGCCTGTACTGTGTAATAGAAGGCCTACGTCAGGAACCAAAACCAGCATCTCGTGGCCTTTCTGAGACAACTCCTCCACCAGGATCTTCATACTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGCAGGCAAGACCCAGCAAGActgtaaaagctgtaaaacTCTGCAGTTTTCCCATGTTCCTCCCAGAAACAAGCTTTTATAGGTGAAGAACTGCAGGAGGAACACTGCCACAGCGCTGCAACAGTTCCACAGTGCAGAGCTctttcagagaaactgaagcagCCCACAGTTACTGCACTATAATACTCCAGTCTCCAGGGAGTGGTGTAATGATACAAAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCtcacatacagtaccaatcTAAAGTTTGGACTCACTCTGTTATTCAAAATgttgctttatttctttatttaatttattttctactatTTTCTGTAGattcatattaaagacattaaaacaattaagggacacacatggaattatgtagtaaacagtgaTGAACCAGTATCTTCCCACCTTACACAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCTCATATACAGCACCAATCTCAAGTTTGGACTCCAACCCTTCTcaatcaatgtttttctttatctctttatttaatttattttctactattttctgtagattaatattaaagacgtgaaaacaattaagggacacacatggaattatgtagCAAAAAGtaatgaactgagatggtgatttgaggtgatttatttgggatgagctggagcttcacagcatgaatgaTGATCcggaacgcagcagcacgtctggtcttcaaccagccaaaacgggcacatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaagctcttactatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggctgctgcgc
>TU222779
attttttttgtctcttttgaatttgcaacctACAATTTTCCTTTcgattcttacattttttaatttatttgtgtacttttggcacaaaaaatttactccagaaaaaaaaaaaaaaaaaaacatgctactGCTGCTACTCACCGCTGGCAGaggcttcttcttctttgcaCAATTGATGCCCCCAATCGTCACCATGTTGGGCATTATGGGTCTCGGGTACTCAAAAACGAAGTCATACCTCATTAGCCAAATCGCACCGTGACTGAGAACCTCTTTGAAGCTGGTGTCCCTCTGAAGATATTTGCTGACCAGTTTATCAGAACTGTCATAAATATACCAGCATAGGATCGACTCAAATCCCATCATTAAGATGTTCTTCACCCTCTGAGGGAAGGTCATAACGTCACTGTTCCTCGACAAAAAGCGAGGGACGTAGGAAGGTAGTGAGAGGCACTGGGCTGCTAATTGCTCCAGACCGCAGGGCATCGCACGCAGGAGGAAGACGACGGGAATCGAGAATGCCTCAGCAATGATGGGACCACAGGGCTGGACTGGGTCGGTCAGCATGAGGTCAAAACCTCGTTCCTTCAGGCTCTTCATCACAGGTTCATCATATAGCAGCTTCTCACAGCCTCTCAGTTGCATCTCGTTGAAGCTCAGAAGCCGGTCGATGCCCTCAAAGATGTTGGAAAGCTTCTTCGTCATCCTGTGCTTAAACCTGTCGATGTGGGCGTCCATTTGGGCCTGGCTGTAGGGCACTTTAAAGGTCTGGGTGGTGTACTTGCCTGTACTGTGTAATAGAAGGCCTACGTCAGGAACCAAAACCAGCATCTCGTGGCCTTTCTGAGACAACTCCTCCACCAGGATCTTCATACTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGCAGGCAAGACCCAGCAAGActgtaaaagctgtaaaacTCTGCAGTTTTCCCATGTTCCTCCCAGAAACAAGCTTTTATAGGTGAAGAACTGCAGGAGGAACACTGCCACAGCGCTGCAACAGTTCCACAGTGCAGAGCTctttcagagaaactgaagcagCCCACAGTTACTGCACTATAATACTCCAGTCTCCAGGGAGTGGTGTAATGATACAAAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCtcacatacagtaccaatcTAAAGTTTGGACTCACTCTGTTATTCAAAATgttgctttatttctttatttaatttattttctactatTTTCTGTAGattcatattaaagacattaaaacaattaagggacacacatggaattatgtagtaaacagtgaTGAACCAGTATCTTCCCACCTTACACAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCTCATATACAGCACCAATCTCAAGTTTGGACTCCAACCCTTCTcaatcaatgtttttctttatctctttatttaatttattttctactattttctgtagattaatattaaagacgtgaaaacaattaagggacacacatggaattatgtagCAAAAAGtaatgaactgagatggtgatttgaggtgatttatttgggatgagctggagcttcacagcatgaatgaTGATCcggaacgcagcagcacgtctggtcttcaaccagccaaaacgggcacatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaagctcttactatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggctgctgcgc
>TU222780
attttttttgtctcttttgaatttgcaacctACAATTTTCCTTTcgattcttacattttttaatttatttgtgtacttttggcacaaaaaatttactccagaaaaaaaaaaaaaaaaaaacatgctactGCTGCTACTCACCGCTGGCAGaggcttcttcttctttgcaCAATTGATGCCCCCAATCGTCACCATGTTGGGCATTATGGGTCTCGGGTACTCAAAAACGAAGTCATACCTCATTAGCCAAATCGCACCGTGACTGAGAACCTCTTTGAAGCTGGTGTCCCTCTGAAGATATTTGCTGACCAGTTTATCAGAACTGTCATAAATATACCAGCATAGGATCGACTCAAATCCCATCATTAAGATGTTCTTCACCCTCTGAGGGAAGGTCATAACGTCACTGTTCCTCGACAAAAAGCGAGGGACGTAGGAAGGTAGTGAGAGGCACTGGGCTGCTAATTGCTCCAGACCGCAGGGCATCGCACGCAGGAGGAAGACGACGGGAATCGAGAATGCCTCAGCAATGATGGGACCACAGGGCTGGACTGGGTCGGTCAGCATGAGGTCAAAACCTCGTTCCTTCAGGCTCTTCATCACAGGTTCATCATATAGCAGCTTCTCACAGCCTCTCAGTTGCATCTCGTTGAAGCTCAGAAGCCGGTCGATGCCCTCAAAGATGTTGGAAAGCTTCTTCGTCATCCTGTGCTTAAACCTGTCGATGTGGGCGTCCATTTGGGCCTGGCTGTAGGGCACTTTAAAGGTCTGGGTGGTGTACTTGCCTGTACTGTGTAATAGAAGGCCTACGTCAGGAACCAAAACCAGCATCTCGTGGCCTTTCTGAGACAACTCCTCCACCAGGATCTTCATACTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGCAGGCAAGACCCAGCAAGActgtaaaagctgtaaaacTCTGCAGTTTTCCCATGTTCCTCCCAGAAACAAGCTTTTATAGGTGAAGAACTGCAGGAGGAACACTGCCACAGCGCTGCAACAGTTCCACAGTGCAGAGCTctttcagagaaactgaagcagCCCACAGTTACTGCACTATAATACTCCAGTCTCCAGGGAGTGGTGTAATGATACAAAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCtcacatacagtaccaatcTAAAGTTTGGACTCACTCTGTTATTCAAAATgttgctttatttctttatttaatttattttctactatTTTCTGTAGattcatattaaagacattaaaacaattaagggacacacatggaattatgtagtaaacagtgaTGAACCAGTATCTTCCCACCTTACACAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCTCATATACAGCACCAATCTCAAGTTTGGACTCCAACCCTTCTcaatcaatgtttttctttatctctttatttaatttattttctactattttctgtagattaatattaaagacgtgaaaacaattaagggacacacatggaattatgtagCAAAAAGtaatgaactgagatggtgatttgaggtgatttatttgggatgagctggagcttcacagcatgaatgaTGATCcggaacgcagcagcacgtctggtcttcaaccagccaaaacgggcacatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaagctcttactatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggctgctgcgc
>TU222781
attttttttgtctcttttgaatttgcaacctACAATTTTCCTTTcgattcttacattttttaatttatttgtgtacttttggcacaaaaaatttactccagaaaaaaaaaaaaaaaaaaacatgctactGCTGCTACTCACCGCTGGCAGaggcttcttcttctttgcaCAATTGATGCCCCCAATCGTCACCATGTTGGGCATTATGGGTCTCGGGTACTCAAAAACGAAGTCATACCTCATTAGCCAAATCGCACCGTGACTGAGAACCTCTTTGAAGCTGGTGTCCCTCTGAAGATATTTGCTGACCAGTTTATCAGAACTGTCATAAATATACCAGCATAGGATCGACTCAAATCCCATCATTAAGATGTTCTTCACCCTCTGAGGGAAGGTCATAACGTCACTGTTCCTCGACAAAAAGCGAGGGACGTAGGAAGGTAGTGAGAGGCACTGGGCTGCTAATTGCTCCAGACCGCAGGGCATCGCACGCAGGAGGAAGACGACGGGAATCGAGAATGCCTCAGCAATGATGGGACCACAGGGCTGGACTGGGTCGGTCAGCATGAGGTCAAAACCTCGTTCCTTCAGGCTCTTCATCACAGGTTCATCATATAGCAGCTTCTCACAGCCTCTCAGTTGCATCTCGTTGAAGCTCAGAAGCCGGTCGATGCCCTCAAAGATGTTGGAAAGCTTCTTCGTCATCCTGTGCTTAAACCTGTCGATGTGGGCGTCCATTTGGGCCTGGCTGTAGGGCACTTTAAAGGTCTGGGTGGTGTACTTGCCTGTACTGTGTAATAGAAGGCCTACGTCAGGAACCAAAACCAGCATCTCGTGGCCTTTCTGAGACAACTCCTCCACCAGGATCTTCATACTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGCAGGCAAGACCCAGCAAGActgtaaaagctgtaaaacTCTGCAGTTTTCCCATGTTCCTCCCAGAAACAAGCTTTTATAGGTGAAGAACTGCAGGAGGAACACTGCCACAGCGCTGCAACAGTTCCACAGTGCAGAGCTctttcagagaaactgaagcagCCCACAGTTACTGCACTATAATACTCCAGTCTCCAGGGAGTGGTGTAATGATACAAAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCtcacatacagtaccaatcTAAAGTTTGGACTCACTCTGTTATTCAAAATgttgctttatttctttatttaatttattttctactatTTTCTGTAGattcatattaaagacattaaaacaattaagggacacacatggaattatgtagtaaacagtgaTGAACCAGTATCTTCCCACCTTACACAGTTCACTATATAAAGCAGGCACaagattttaaccctttcagccGATTCTATTCTCATATACAGCACCAATCTCAAGTTTGGACTCCAACCCTTCTcaatcaatgtttttctttatctctttatttaatttattttctactattttctgtagattaatattaaagacgtgaaaacaattaagggacacacatggaattatgtagCAAAAAGtaatgaactgagatggtgatttgaggtgatttatttgggatgagctggagcttcacagcatgaatgaTGATCcggaacgcagcagcacgtctggtcttcaaccagccaaaacgggcacatgtcaccccgctgctcattgagctccattggctaccagttgatgctcgcatcaaattcaaagctcttactatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggctgctgcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222778 True 1880 lncRNA 0.44 2 2398876 2402019
TU222779 False 1880 lncRNA 0.44 2 2398876 2402019
TU222780 False 1880 lncRNA 0.44 2 2398876 2402019
TU222781 False 1880 lncRNA 0.44 2 2398876 2402019

Neighbor

gene id symbol gene type direction distance location
znf804a znf804a coding upstream 206962 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 516183 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 520021 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 576656 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 602129 1783878 ~ 1796747 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 38637 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 202039 2604058 ~ 2655714 (+)
map2 map2 coding downstream 258436 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 509988 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1637967 4039986 ~ 4043593 (+)
G164505 NA non-coding upstream 9099 2388628 ~ 2389777 (+)
G164510 NA non-coding upstream 27451 2371196 ~ 2371425 (+)
G164501 NA non-coding upstream 101889 2296533 ~ 2296987 (+)
G164498 NA non-coding upstream 171084 2227546 ~ 2227792 (+)
G164467 NA non-coding upstream 205688 2192815 ~ 2193188 (+)
G164518 NA non-coding downstream 515 2402534 ~ 2407552 (+)
G164537 NA non-coding downstream 81544 2483563 ~ 2487195 (+)
G164540 spopla,LOC108412981,LOC107658226,LOC107556446,LOC107558043,LOC107720326,LOC107751611,LOC108270802 non-coding downstream 94578 2496597 ~ 2501144 (+)
G164590 NA non-coding downstream 255103 2657122 ~ 2732983 (+)
G164610 NA non-coding downstream 290574 2692593 ~ 2693184 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 560789 1802787 ~ 1838087 (+)
tspear tspear other upstream 638316 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 902496 1404101 ~ 1496380 (+)
G164126 NA other upstream 1826683 538279 ~ 572193 (+)
nostrin nostrin other upstream 2223951 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 88025 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2866020 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3715345 6117364 ~ 6123051 (+)
G165406 NA other downstream 3742918 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3758381 6160400 ~ 6237986 (+)

Expression


Co-expression Network