G164518


Basic Information

Item Value
gene id G164518
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2402534 ~ 2407552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222787
cttaaagataaatgtgctaattAGTACaagaatttaaagtataaaccatattctggtttgtttgacaTTAATTATTCCAAACAATTACACATGTGTTCATGTAAAgctttaaaatactgtagtcttcaatataaaatgtacagtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaataaaataggaCCAAGGATTGACCCTTGTGGATCTCCACATGGAAAGTCAGCACAAGAAGACATCTTTCCTCCAACAGATACCCTGAAACTTCTATTGATTAAATATGAAGCACATGCtgagactgaaaacatttatcAAAATCCATTACAAAGCTAATGTTGAAGAACGGTTCCATGAGCTGTTCGGTTTTTTAGAAAGGTTCTAAGAGATGTTTGGTGTAGCATCACAGTGAATAATCAATGTGTAAAATATGATGCTGTCCAATGGACCCTCCAAACACCTCCACTCAACTGGAATTGAGTGACTGaatcaaacaaaagaaaatagtCAAAAACTGATACTATTTAGTGCTACTCACCGCTGGCAGAGACTTCTTCTTTGCACAATTGATGCCGCCGATTGTCACCATGTTGGGCATCATGGGTCTCGGGTAATCGAAAGTGAAATCATACCTCATTAGCCAAATCGCACTGTGACTAAGAAGCTCTTTATAGGTAGTGTCTCTCTGAAGGTATCTACTGGACAGTTCATCAGAGCTGCTGTAAAGCGTTTTGCACATGAGCGGCTCAAGTCCCGTCATGACCATGTTCTTGACCCTCTGAGGAAAGTTCATGACGTCCGAGTTGCCCGTTAATAATCGTGGGATGTAGGAAGGTGGTGAGGGGCACTGGGCTGCAGCCATGTCCAAGCCACAAGGTATTCTGCGAAGGAAATTAACAGTAGGGATTGAGAACGCCTCAGCAATGATCAGACCACAGGGCAGGAACGGGTCGGTCAGCATGACGTCGAAACCTCGTTCCTTCAGGCTCTTCATCAGAGGTTTATCGTAGAGCAGAGTTTCACAGCCCTTCACCTGCATCTCATTGAAGTTTATAAGCATCTTTATATTTTCCCATGCATCAGTAATGTTGGAGGCTTCATTATTCCAGCTTTAAAGTCATCCATTATAGCATCCAGATCTGCCTTAGTGTAGGGCACCCTAAAGGTCTGGGTGATGTAGCTGCCATTGCCGATATGAAAGCTAGTGTCAGGAACTAAAACCACCATCTCGTGGCCTTTCCGAtgcatctcctccaccaggATCTTCATGCTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGAAAGCAAGACCCAGCAAGACCAGCAGCCCCAGAGATGCTGTAAAACTCTGCATCCTTCCCATGTTCATCTCAGAAACGAGTCTTTATATGTAAAGAACCGCAAGAAGAAACACTGCCACAGCTCAACAGCTCCACAGTCTACAGCAATTCCTTATATAACCCTGAGTATGAG
>TU222788
cttaaagataaatgtgctaattAGTACaagaatttaaagtataaaccatattctggtttgtttgacaTTAATTATTCCAAACAATTACACATGTGTTCATGTAAAgctttaaaatactgtagtcttcaatataaaatgtacagtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaataaaataggaCCAAGGATTGACCCTTGTGGATCTCCACATGGAAAGTCAGCACAAGAAGACATCTTTCCTCCAACAGATACCCTGAAACTTCTATTGATTAAATATGAAGCACATGCtgagactgaaaacatttatcAAAATCCATTACAAAGCTAATGTTGAAGAACGGTTCCATGAGCTGTTCGGTTTTTTAGAAAGGTTCTAAGAGATGTTTGGTGTAGCATCACAGTGAATAATCAATGTGTAAAATATGATGCTGTCCAATGGACCCTCCAAACACCTCCACTCAACTGGAATTGAGTGACTGaatcaaacaaaagaaaatagtCAAAAACTGATACTATTTAGTGCTACTCACCGCTGGCAGAGACTTCTTCTTTGCACAATTGATGCCGCCGATTGTCACCATGTTGGGCATCATGGGTCTCGGGTAATCGAAAGTGAAATCATACCTCATTAGCCAAATCGCACTGTGACTAAGAAGCTCTTTATAGGTAGTGTCTCTCTGAAGGTATCTACTGGACAGTTCATCAGAGCTGCTGTAAAGCGTTTTGCACATGAGCGGCTCAAGTCCCGTCATGACCATGTTCTTGACCCTCTGAGGAAAGTTCATGACGTCCGAGTTGCCCGTTAATAATCGTGGGATGTAGGAAGGTGGTGAGGGGCACTGGGCTGCAGCCATGTCCAAGCCACAAGGTATTCCGCGAAGGAAATTAACAGTAGGGATTGAGAACGCCTCAGCAATGATCAGACCACAGGGCAGGAACGGGTCGGTCAGCATGAGGTCGAAACTTCGTTCTTTCAGGCTCTTCGTCAGAGGTTTATCGTAGAGCAGAGTTTCACAGCCCTTCACCTGCATCTCATTGAAGTTTATAAGCATCTTTATATTTTCCCATGCATCAGTAATGTTGGAGGCTTCATTATTCCAGCTTTAAAGTCATCCATTATAGCATCCAGATCTGCCTTAGTGTAGGGCACCCTAAAGGTCTGGGTGATGTAGCTGCCATTGCCGATATGAAAGCTAGTGTCAGGAACTAAAACCACCATCTCGTGGCCTTTCCGAtgcatctcctccaccaggATCTTCATGCTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGAAAGCAAGACCCAGCAAGACCAGCAGCCCCAGAGATGCTGTAAAACTCTGCATCCTTCCCATGTTCATCTCAGAAACGAGTCTTTATATGTAAAGAACCGCAAGAAGAAACACTGCCACAGCTCAACAGCTCCACAGTCTACAGCAATTCCTTATATAACCCTGAGTATGAG
>TU222789
cttaaagataaatgtgctaattAGTACaagaatttaaagtataaaccatattctggtttgtttgacaTTAATTATTCCAAACAATTACACATGTGTTCATGTAAAgctttaaaatactgtagtcttcaatataaaatgtacagtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaataaaataggaCCAAGGATTGACCCTTGTGGATCTCCACATGGAAAGTCAGCACAAGAAGACATCTTTCCTCCAACAGATACCCTGAAACTTCTATTGATTAAATATGAAGCACATGCtgagactgaaaacatttatcAAAATCCATTACAAAGCTAATGTTGAAGAACGGTTCCATGAGCTGTTCGGTTTTTTAGAAAGGTTCTAAGAGATGTTTGGTGTAGCATCACAGTGAATAATCAATGTGTAAAATATGATGCTGTCCAATGGACCCTCCAAACACCTCCACTCAACTGGAATTGAGTGACTGaatcaaacaaaagaaaatagtCAAAAACTGATACTATTTAGTGCTACTCACCGCTGGCAGAGACTTCTTCTTTGCACAATTGATGCCGCCGATTGTCACCATGTTGGGCATCATGGGTCTCGGGTAATCGAAAGTGAAATCATACCTCATTAGCCAAATCGCACTGTGACTAAGAAGCTCTTTATAGGTAGTGTCTCTCTGAAGGTATCTACTGGACAGTTCATCAGAGCTGCTGTAAAGCGTTTTGCACATGAGCGGCTCAAGTCCCGTCATGACCATGTTCTTGACCCTCTGAGGAAAGTTCATGACGTCCGAGTTGCCCGTTAATAATCGTGGGATGTAGGAAGGTGGTGAGGGGCACTGGGCTGCAGCCATGTCCAAGCCACAAGGTATTCCGCGAAGGAAATTAACAGTAGGGATTGAGAACGCCTCAGCAATGATCAGACCACAGGGCAGGAATGGGTCGGTCAGCATGACGTCGAAACCTCGTTCCTTCAGGCTCTTCATCAGAGGTTTATCGTAGAGCAGAGTTTCACAGCCCTTCACCTGCATCTCATTGAAGGTTAGAAGCTTCTTTACATTTTCCCATATATCAAGCAATGTTGGAGGCTTCATTGATCCTGATTTAAAGTCTTCCACTACAGCATCCAGATCTGCCCTAGTGTAGGGCACCCTAAAGGTCTGGGTGATGTAGCTGCCATTGCCGATATGAAAGCTAGTGTCAGGAACTAAAACCACCATCTCGTGGCCTTTCCGAtgcatctcctccaccaggATCTTCATGCTGAGCCAGTGGCTGCCGTCCACAGGCATGACCAGTACCTTCCCACCTTCCACAGATCTTATAGAAGAGAAAGCAAGACCCAGCAAGACCAGCAGCCCCAGAGATGCTGTAAAACTCTGCATCCTTCCCATGTTCATCTCAGAAACGAGTCTTTATATGTAAAGAACCGCAAGAAGAAACACTGCCACAGCTCAACAGCTCCACAGTCTACAGCAATTCCTTATATAACCCTGAGTATGAG

Function

GO: NA

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko03320 PPAR signaling pathway
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU222787 False 1525 lncRNA 0.42 2 2402534 2407552
TU222788 False 1525 lncRNA 0.42 3 2402534 2407552
TU222789 True 1526 lncRNA 0.42 3 2402534 2407552

Neighbor

gene id symbol gene type direction distance location
znf804a znf804a coding upstream 210620 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 519841 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 523679 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 580314 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 605787 1783878 ~ 1796747 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 33104 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 196506 2604058 ~ 2655714 (+)
map2 map2 coding downstream 252903 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 504455 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1632434 4039986 ~ 4043593 (+)
G164516 NA non-coding upstream 515 2398876 ~ 2402019 (+)
G164505 NA non-coding upstream 12757 2388628 ~ 2389777 (+)
G164510 NA non-coding upstream 31109 2371196 ~ 2371425 (+)
G164501 NA non-coding upstream 105547 2296533 ~ 2296987 (+)
G164498 NA non-coding upstream 174742 2227546 ~ 2227792 (+)
G164537 NA non-coding downstream 76011 2483563 ~ 2487195 (+)
G164540 spopla,LOC108412981,LOC107658226,LOC107556446,LOC107558043,LOC107720326,LOC107751611,LOC108270802 non-coding downstream 89045 2496597 ~ 2501144 (+)
G164590 NA non-coding downstream 249570 2657122 ~ 2732983 (+)
G164610 NA non-coding downstream 285041 2692593 ~ 2693184 (+)
G164633 NA non-coding downstream 363794 2771346 ~ 2771853 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 564447 1802787 ~ 1838087 (+)
tspear tspear other upstream 641974 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 906154 1404101 ~ 1496380 (+)
G164126 NA other upstream 1830341 538279 ~ 572193 (+)
nostrin nostrin other upstream 2227609 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 82492 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2860487 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3709812 6117364 ~ 6123051 (+)
G165406 NA other downstream 3737385 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3752848 6160400 ~ 6237986 (+)

Expression


Co-expression Network