G54878


Basic Information

Item Value
gene id G54878
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7118528 ~ 7118767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62445
GTGAGTGATTAGCACAAGAAAGGAGATAAATGTATTAATTAAATAGTTTATTTTAGAAATTTTGATTATCCCTTTTTATTATTGGAATGGCACAGTGATTAACAAGAAAAATAAAAAATGAAACTAACTGTCATAAAAGGTTGCTGACCCCTGCTCAGGCTCATGGACATTTCAAAGCAATTAAAAGTTACAGATTTTTTTTTTTCTTTTACAATTAGAGTCTGTTTAGCCGTATCAGAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU62445 True 240 lncRNA 0.30 1 7118528 7118767

Neighbor

gene id symbol gene type direction distance location
CI01000009_07064060_07084764 ZEB2A coding downstream 33310 7063797 ~ 7085218 (-)
CI01000009_07020336_07047155 NA coding downstream 70351 7020315 ~ 7048177 (-)
CI01000009_06913437_06917631 NA coding downstream 200897 6912470 ~ 6917631 (-)
CI01000009_06891877_06908223 EFNB2A, EFNB2 coding downstream 210305 6891241 ~ 6908223 (-)
CI01000009_06253421_06255264 NA coding downstream 862582 6253421 ~ 6255946 (-)
CI01000009_07224625_07229839 NA coding upstream 105549 7224316 ~ 7230651 (-)
CI01000009_07383927_07391805 ITM2B coding upstream 264887 7383654 ~ 7391994 (-)
CI01000009_07500752_07541007 LRCH1 coding upstream 381835 7500602 ~ 7541007 (-)
CI01000009_07625693_07637462 SLC39A10 coding upstream 506787 7625554 ~ 7637462 (-)
CI01000009_07953250_07953748 NA coding upstream 833951 7952718 ~ 7954139 (-)
G54877 NA non-coding downstream 1889 7116374 ~ 7116639 (-)
G54849 NA non-coding downstream 156356 6961953 ~ 6962172 (-)
G54839 NA non-coding downstream 165339 6952942 ~ 6953189 (-)
G54836 NA non-coding downstream 167105 6951207 ~ 6951423 (-)
G54499 NA non-coding downstream 470237 6648087 ~ 6648291 (-)
G54887 NA non-coding upstream 8595 7127362 ~ 7127584 (-)
G54900 NA non-coding upstream 22962 7141729 ~ 7141964 (-)
G54917 NA non-coding upstream 38004 7156771 ~ 7157175 (-)
G55110 NA non-coding upstream 52330 7171097 ~ 7171518 (-)
G55121 NA non-coding upstream 64115 7182882 ~ 7183239 (-)
G53515 NA other downstream 1613280 5502395 ~ 5505248 (-)
G52828 NA other downstream 2887059 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 3856571 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 4219121 2883688 ~ 2893975 (-)
G52410 NA other downstream 4555995 2551724 ~ 2562533 (-)
G55814 NA other upstream 1307054 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 1739385 8856310 ~ 8860563 (-)
G59097 NA other upstream 5169450 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 6856621 13975099 ~ 13978614 (-)
G59490 NA other upstream 6914797 14033564 ~ 14037873 (-)

Expression


Co-expression Network