G164638


Basic Information

Item Value
gene id G164638
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2818024 ~ 2915105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222962
ttGAGTAATGTATTGATTAAAATATTGAGTAAAAGGTCAGTCTAAGGAAAGTCTGAAAAGTTTCGAAAAGTGCAgtcaaaaagaccatcaaaattgttataatgataaaactggctctcatcaggacagccccaaaaagaaagagcaagacttACATCTGTTACAAAAGTTAAGTTCagcagtttttacattttaattgttaatgtAACAAATGTGTTGTTAcattctatttattattattttttagagttGGCATACAGTCAATAGCCTTATTAGAGTAATGTTATCATACtaatattatggcaagaaaaaaataaatgattgtaagaaatgaaggtcagtcagtccgaacaatttcaagaactttgaaagtgtcctcaagtgcagtcacaaagaccatcaaaaatgttataatggtgaaactggcactcatcaggaccaccccgggaaagtttatattattatgtgATATATGAGTTAAAAGTGAGATCAGTGAGTCacttttttaacagtaaattcAAGCTCAGCGTttagtatacaaaaaaaaaagttttttttatgttttgctaTGATTCACAGGCATTTTAGAAAATACAACAAACACTATTACGTAgcgatcctttttttttttttttcagaaatcgATATCATGACAACTTTCAAAAATACCATAGTAATCACTACACCACACTGTAGCACTTATCTTgtgtccacttagcaacactatagcaaccatctggaaaaccaaagcaaccaccatagATACCTTAACAATAACTTAGCAGCCATCTAGCAGCACTAATGTAACCACTTGCATACCATAGcaacttcataaaaaaaacacaaaatactatattaacttaacaaccacctagcaagacTATAAGCAAACACCTGAAATACAACACCAACCATCAAgtaatgccatagcaaccaccccagatgccatagcaaccacttagagaCCCCTACCTAGCAATACTATAGCAACAACTTACTAAATAATAGCAACTTACTAACATCCTGGTGtacaatagcaaccacttagcaactttgtgacaaccacctaacaaccacttaTGAAAACCATTGCAGCCACCTTGGATAATATATCTACTATCAATTAACTCCATAGTGAATACcccaaataccatagcaaccacttagagaCTGCCTAGCAACTTACCAAACCATACCAATTTACTAACCACCTGGGACCACCTAAGAAATCCAAAACAACTACAGAACAAACACTTATCAAAACCATTGCAACTACATTGGGTACCAtataaaccacctagcaaccagtGGGAATCACTTTAGCAGCAAAACCTCTCTACATATTTCTGCTTATTTAATAATTACCTTTTGTATGCAATTAAAGCtacaaattttctagttttcaATGGCATTactcaaagatttttttttttaatgcatttttgcaCACCTAGTGGGCAGAAAGCAGCCATGGTTCCACCTGCCGCTGGAAGAGCTTGGCATTCAGGCTCATCCCTCGTTCTTCTCTTTCCTTTTATACACCCCCTGCTACACCTGGGGGATCTTGTGTTCTTCCTCTCCTTTCCTTTTGCATGTCATGTAGTAGGTGCTGTCAGTGTCGTGGGCCTGCacttgtttgtctgtttgtttgtctgtttgtttgtatctgctgttgtttgtttgttgtctgTGCTCTGTAGTGGTAATGGCACTCTGTAAGAGCTGCTGGAGGACTGGGCCAGTGCTCAACATGTTCGCTGAGGCTAGCATTAGCTGCAGTCCCTGCAGATTAGCTGAACATGGATATAaatagccccccccccccccgactcCAGATGTAGTAAGTGACTAGACTTTTGTGTCTGAAGTTTGTTTTTTAGCtgtatagctctggaaaaagttaagagagttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgagcattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaatgagaaatggctgaaataacacaaaaaagatgtagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataagtttTAAGAGttcagaaatcaat

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU222962 True 2168 lncRNA 0.36 2 2818024 2915105

Neighbor

gene id symbol gene type direction distance location
kansl1l NA coding upstream 162310 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 344127 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 626110 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 935331 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 939169 1870486 ~ 1878855 (+)
LOC103033219 NA coding downstream 1124881 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 1463917 4379022 ~ 4448620 (+)
hibch hibch coding downstream 1756027 4671132 ~ 4734221 (+)
mstn mstn coding downstream 1841639 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 1895443 4810548 ~ 4817692 (+)
G164635 NA non-coding upstream 34429 2781665 ~ 2783595 (+)
G164633 NA non-coding upstream 46171 2771346 ~ 2771853 (+)
G164590 NA non-coding upstream 85041 2657122 ~ 2732983 (+)
G164610 NA non-coding upstream 124840 2692593 ~ 2693184 (+)
G164540 spopla,LOC108412981,LOC107658226,LOC107556446,LOC107558043,LOC107720326,LOC107751611,LOC108270802 non-coding upstream 316880 2496597 ~ 2501144 (+)
G164652 NA non-coding downstream 97064 3012169 ~ 3013616 (+)
G164699 NA non-coding downstream 167311 3082416 ~ 3082950 (+)
LOC111194872 NA non-coding downstream 700284 3615389 ~ 3617690 (+)
G164718 NA non-coding downstream 735270 3650375 ~ 3680035 (+)
G164725 ikzf2 non-coding downstream 885231 3800336 ~ 3802599 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 325033 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 979937 1802787 ~ 1838087 (+)
tspear tspear other upstream 1057464 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 1321644 1404101 ~ 1496380 (+)
G164126 NA other upstream 2245831 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2352934 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3202259 6117364 ~ 6123051 (+)
G165406 NA other downstream 3229832 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3245295 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 3424890 6339995 ~ 6345403 (+)

Expression


Co-expression Network