G164642


Basic Information

Item Value
gene id G164642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2858618 ~ 2859368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222966
gtcccattacttttgccatttcccatggaagctaaaacaCAATGCACTGATTTACCAGATTAAACAGGTCAGTATTCAGCCTCAATTATAAGAaatcacctcacaacttatacagcttTAGTCCCCTGAGATAACACTATGATCAGTTTATATACTGTTATCCCCTTAATTTCCTGCTATTACTTAACTCTGACCAAGACAATATATAGAACAAAAGGGACTGAAAATAAATGACCACTCCTTTGTTTTATCAACTTTTTGTTACCTTTTTTCCCATTGTTTCTTCTACATCCCCATTATTGTGCTGTTGACCatctacactcttaaaaatgcaGGTCCTACAAAAGGTTCTCtgagtgatgccatagaagaaccatatTTAATTCCATAAttcgactcagccttgtgctgatccacatcaccctttggagtgatgaggggaaagagcgccatttactgtacccacccagaaagagagcgaggccaattgtgctctctcagggctctgtcagctgatggcaagctgcatgaccaggattcaaaccagaaaTCTCCTAAACAtaatggcagcactttagaaCGATGGACCACTCGTATTTGCCCACattcacacattttaatataaaagtggttcttctacactgtaaaccaacAATTAATTTAAACTCAAATTAATTAAGCctgtttttatgtaattttgagTGAACATTTGagtttaatcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222966 True 724 lncRNA 0.38 2 2858618 2859368

Neighbor

gene id symbol gene type direction distance location
kansl1l NA coding upstream 202904 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 384721 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 666704 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 975925 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 979763 1870486 ~ 1878855 (+)
cps1 cps1 coding downstream 52639 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1180618 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 1519654 4379022 ~ 4448620 (+)
hibch hibch coding downstream 1811764 4671132 ~ 4734221 (+)
mstn mstn coding downstream 1897376 4756744 ~ 4760314 (+)
G164640 NA non-coding upstream 17940 2836766 ~ 2840678 (+)
G164635 NA non-coding upstream 75023 2781665 ~ 2783595 (+)
G164633 NA non-coding upstream 86765 2771346 ~ 2771853 (+)
G164590 NA non-coding upstream 125635 2657122 ~ 2732983 (+)
G164610 NA non-coding upstream 165434 2692593 ~ 2693184 (+)
G164652 NA non-coding downstream 152801 3012169 ~ 3013616 (+)
G164699 NA non-coding downstream 223048 3082416 ~ 3082950 (+)
LOC111194872 NA non-coding downstream 756021 3615389 ~ 3617690 (+)
G164718 NA non-coding downstream 791007 3650375 ~ 3680035 (+)
G164725 ikzf2 non-coding downstream 940968 3800336 ~ 3802599 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 365627 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 1020531 1802787 ~ 1838087 (+)
tspear tspear other upstream 1098058 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 1362238 1404101 ~ 1496380 (+)
G164126 NA other upstream 2286425 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2408671 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3257996 6117364 ~ 6123051 (+)
G165406 NA other downstream 3285569 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3301032 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 3480627 6339995 ~ 6345403 (+)

Expression


Co-expression Network