G164652


Basic Information

Item Value
gene id G164652
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3012169 ~ 3013616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU222980
tttttttttaagtgagatTATTactggttaataattaggttgtaaaccattaatacacagttacaacacatgtaccatgtaccaaatagtgattccacattcgtTTATACTGGTAAACCTCAGATCTCATCTtagatgcttatcttacttttCCATCTTTTCTATCAGTCAGCTTtaactttttattcatttaactatattaacatgttaaatgactaaactggcTTTCTTACTTACTAGATATGTTTAGAAAAGTCATTGTCACAGTTGTTCAgtctatgtatgtgtttattaagtgcttattttttaaagtgttttttaagtatttgcaaGTTAATTCAtaagcattaataaactcatttataatctatctataaaccctttataaagaagccttattttaaagtggtgcccTAATGTTTTTGAGGCTTAACTCAACATGAGTTGATGTAGAAGTTAAAAAATGTGAGTTGAGCCCTATCTGGAAAAGAttaatttctcagggggtcctaatgtattttttttcttttatgggggtccgcttttattttatttctgtccggaacgaccatgtacgtgtttttctaagacctcctctgagaaaattacaggctgaattatctactatagctatttgtccactgccgcacacTGTAATTACGCTTTGCgtgatgtaaaaaaacagaacagcgagtggaaatggaggagctactgaacacgttgtcatgtgaccgagaaagacaaaaaactcAATGGTCctcgtgttttttttatttttttttattgcagttcagatgcaagagttttatcactgagtaaaagtgtgaaatatttttcacagatgtacaagcaaaggtaaaaaaaaaaaaagcacaagccTAACTAAAACATCTGAGCCAAAATATAGTCTAAACAGGTTAAACAGGAGACAAAAAAATAAGGGTGaaaaattgcaaaacaaaatcagactaaaaaaggcaaaaatagaCAAGCGAAGAACATACAGCTCAGCATGTAGCTGAATCACCAGGGGGTAATATCGGCATTTATGCATGGGTAAACAGCTGAAAAGAATCAAAACTCAGGTGAGGCTGATTCTGGCTGGCTTAGATTCATGACCGAGAAGTGCATTCTGGTATTTAGAGTTCATGAAGGTGGAAAAGTGGCCAGTTCTCTTCAGCCCTCTAAACCCACGTCAGATCCACCCATACCTTATAGTGCTAAATATGACATGATATAAGGATATAAGATGGCACGGACTACAAAATGACAAACTACAGAACTTCAGTGGTCTATCAGTATGGTATCTACGGTATGTTACCATGGAGATACAGAGTGAAGTGTGTGTAATGCCTGTGTGTGCTCGTGTGATTGGATATGTCTTTAAACTGTGAGGCGGAGGAAGACTTTTTGGGAAATCTCAATAAACACCTATGTGTCATCCGTTC
>TU222983
ccatgtaccaaatagtgattccacattcgtTTATACTGGTAAACCTCAGATCTCATCTtagatgcttatcttacttttCCATCTTTTCTATCAGTCAGCTTtaactttttattcatttaactatattaacatgttaaatgactaaactggcTTTCTTACTTACTAGATATGTTTAGAAAAGTCATTGTCACAGTTGTTCAgtctatgtatgtgtttattaagtgcttattttttaaagtgttttttaagtatttgcaaGTTAATTCAtaagcattaataaactcatttataatctatctataaaccctttataaagaagccttattttaaagtggtgcccTAATGTTTTTGAGGCTTAACTCAACATGAGTTGATGTAGAAGTTAAAAAATGTGAGTTGAGCCCTATCTGGAAAAGAttaatttctcagggggtcctaatgtattttttttcttttatgggggtccgcttttattttatttctgtccggaacgaccatgtacgtgtttttctaagacctcctctgagaaaattacaggctgaattatctactatagctatttgtccactgccgcacacTGTAATTACGCTTTGCgtgatgtaaaaaaacagaacagcgagtggaaatggaggagctactgaacacgttgtcatgtgaccgagaaagacaaaaaactcAATGGTCctcgtgttttttttatttttttttattgcagttcagatgcaagagttttatcactgagtaaaagtgtgaaatatttttcacagatgtacaagcaaaggtaaaaaaaaaaaaagcacaagccTAACTAAAACATCTGAGCCAAAATATAGTCTAAACAGGTTAAACAGGAGACAAAAAAATAAGGGTGaaaaattgcaaaacaaaatcagactaaaaaaggcaaaaatagaCAAGCGAAGAACATACAGCTCAGCATGTAGCTGAATCACCAGGGGGTAATATCGGCATTTATGCATGGGTAAACAGCTGAAAAGAATCAAAACTCAGGTGAGGCTGATTCTGGCTGGCTTAGATTCATGACCGAGAAGTGCATTCTGGTATTTAGAGTTCATGAAGGTGGAAAAGTGGCCAGTTCTCTTCAGCCCTCTAAACCCACGTCAGATCCACCCATACCTTATAGTGCTAAATATGACATGATATAAGGATATAAGATGGCACGGACTACAAAATGACAAACTACAGAACTTCAGTGGTCTATCAGTATGGTATCTACGGTATGTTACCATGGAGATACAGAGTGAAGTGTGTGTAATGCCTGTGTGTGCTCGTGTGATTGGATATGTCTTTAAACTGTGAGGCGGAGGAAGACTTTTTGGGAAATCTCAATAAACACCTATGTGTCATCCGTTC
>TU222984
aaaaaaaaaagcacaagccTAACTAAAACATCTGAGCCAAAATATAGTCTAAACAGGTTAAACAGGAGACAAAAAAATAAGGGTGaaaaattgcaaaacaaaatcagactaaaaaaggcaaaaatagaCAAGCGAAGAACATACAGCTCAGCATGTAGCTGAATCACCAGGGGGTAATATCGGCATTTATGCATGGGTAAACAGCTGAAAAGAATCAAAACTCAGGTGAGGCTGATTCTGGCTGGCTTAGATTCATGACCGAGAAGTGCATTCTGGTATTTAGAGTTCATGAAGGTGGAAAAGTGGCCAGTTCTCTTCAGCCCTCTAAACCCACGTCAGATCCACCCATACCTTATAGTGCTAAATATGACATGATATAAGGATATAAGATGGCACGGACTACAAAATGACAAACTACAGAACTTCAGTGGTCTATCAGTATGGTATCTACGGTATGTTACCATGGAGATACAGAGTGAAGTGTGTGTAATGCCTGTGTGTGCTCGTGTGATTGGATATGTCTTTAAACTGTGAGGCGGAGGAAGACTTTTTGGGAAATCTCAATAAACACCTATGTGTCATCCGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222980 True 1448 lncRNA 0.35 1 3012169 3013616
TU222983 False 1374 lncRNA 0.36 1 3012243 3013616
TU222984 False 588 lncRNA 0.40 1 3013029 3013616

Neighbor

gene id symbol gene type direction distance location
cps1 cps1 coding upstream 279 2912007 ~ 3011890 (+)
map2 map2 coding upstream 137103 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 356455 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 538272 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 820255 2093349 ~ 2191914 (+)
LOC103033219 NA coding downstream 1026370 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 1365406 4379022 ~ 4448620 (+)
hibch hibch coding downstream 1657516 4671132 ~ 4734221 (+)
mstn mstn coding downstream 1743128 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 1796932 4810548 ~ 4817692 (+)
G164638 NA non-coding upstream 97064 2818024 ~ 2915105 (+)
G164642 NA non-coding upstream 152801 2858618 ~ 2859368 (+)
G164640 NA non-coding upstream 171491 2836766 ~ 2840678 (+)
G164635 NA non-coding upstream 228574 2781665 ~ 2783595 (+)
G164633 NA non-coding upstream 240316 2771346 ~ 2771853 (+)
G164699 NA non-coding downstream 68800 3082416 ~ 3082950 (+)
LOC111194872 NA non-coding downstream 601773 3615389 ~ 3617690 (+)
G164718 NA non-coding downstream 636759 3650375 ~ 3680035 (+)
G164725 ikzf2 non-coding downstream 786720 3800336 ~ 3802599 (+)
G164845 NA non-coding downstream 953880 3967496 ~ 4010020 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 519178 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 1174082 1802787 ~ 1838087 (+)
tspear tspear other upstream 1251609 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 1515789 1404101 ~ 1496380 (+)
G164126 NA other upstream 2439976 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2254423 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3103748 6117364 ~ 6123051 (+)
G165406 NA other downstream 3131321 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3146784 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 3326379 6339995 ~ 6345403 (+)

Expression


Co-expression Network