G164725 (ikzf2)


Basic Information

Item Value
gene id G164725
gene name ikzf2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3800336 ~ 3802599 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223065
atatatatatatatataatacccCCTTAAACTCCAGACTTGCACTGCAAACTTGTTATGTTACGTGAGCTGGTTTGACTGTAGttactaaaaaagaaaattcataGTAGTCGCTGGATAATtataatgatgatgaagatCATGAAgttgtaacaataaaaaaaaagaggggaaGTCCCCAGATTTCTCTATAAACCTGTGCATAATTTAGGGGTTGAGATGTAGATAAAGTCAAACTGCAGAGTGGAGTGAAACGGTTCGCTGTGGAGAAACTGTTAGCggcttatttgatttttttttttttttttaatgtggtgATGATGGGGAAAGAATTTCAGGGGTCACAGTAGCAGGTTTTCCATCCACTAAGTTTCTGTgcatttctacaaataaatatatatatatatatatttttttgcaatatattgcaaattaatattttttgcaatgttACATAATGATGATGCATCAAGTCATAAGCACCTGTGGAGcgttatttcattaattttattcttattgcTTGACATATGTTTAAGACAAATGTTTTCCCTCTACTCTGTACTCCCTATACTGTCCTATACTCCAATCTTTACTTCATATCTCACCCTACACTACTGCATTTGCTCTAAACtgccctaaacttaacctttaCTATGCTATACTcactgtactaccctatactatcataGAGTGAATTCTCCATACTCTCTACACTGCCCTATACTATCCTGTTTtacatattctctctctttactaCTATAcgctatttaatatttaatatactctATAATATTTTTCTGTCCTAACTttatatactatcctatatcCCCTATACTGCCTTATACTATGTTTTACTCAATATGACATGTGTCTCCTGAGTTTAATATGCAACGTTAACGTTGCAATAtgaaatttcctttttttaatctttgcAGCCTATTTTGCCTTTAAACACCCTGAATGTATCTCTTTGCcttaaacagattttaaaacattacattttgttAGAAAAATATGCCTTAGCCTAATCCAGTGAGATTAGGCATTAGATTGTGATGTAGCTTTAAGCGGTTCCATTAGTtccatccaccaccatgtttaacagtttctAACAAAGCGTAACAATTCAAACCACTCAAAGACTTTGGAGTCCACTCAAAGGTTATGCAGAAAGTTAGAAAAATCTAAGAAATCACCCTTTATGATTCATAACTGAACAATAAGCCTGGATTTTAAGGGGTTCACTGTTGGACCTAAACCTTCATATAATTGCTAAATGCTGCCGACATGACGCTTACAGCTGCCTTCCCTTCCGGCACGTCTCCTGAGACGTTTCCACACCGTTTGCTGACGTCCCAGGGGCACAACCCTGGACCACCACTATCCGCTCGCGGGTGGGCGGGGAGTGTCCGGATCTCCTCTAACGGAAGGTGTGCACTCCGCGGACGATGTGCGAGGAGAACTCGTAGCGATCCTTGCTGCAGTGGCCGCAGATGTTGCACTCCAGCGGGTCCCTGTAACCGTGGCACCCCATGTGGATGGTGTACATGACGTGGTCGAGGAACAGCACTCGGCAGTGCTCGCACTGGAACGCCCTTAGCTCCTGCCCCTCGCGGCCAAAAACGCGGACCCCTCCGTCCCGGCCCACTTGACGTCCAGGATCGGCCCCCCGGGGGTCGTCTCGCGGCGTGAAGTGACCCGGACTGACCCGAACCAACCTGTTGTTGACCAGCTTCTCCTGAGGGCTGCTGCGGGCCGAATCAGCCGAATCCTGGCCGCTGGTGTTGCTGGGGGAGCCTTCACGCACCACCTGGGGGTTCTTGGGCCTCACCAGAGAGATGGCGCCGTTGGTGGGGGGAGGGAACTCCGTGGGTGGGGGTGGCTGGTGCATGGAGAGAGCTTCGCGGCTGCTAGGCCGGTCAAGTCGCGGGCCGATGGGGTACATGGGGTGAAACAGTGGGTTCACCATCGGAACGACCTCGGCCATGGTGAGCGGAGGGTGATGCACCACAGGTCGCATGTTGTCGCCCAGGTAGGTTATAGCGTTACTGAGCGCCTGGTCCATGATATGCGCCTGCATCATCTCAGCCTCCTTCAGGTTCACGTCGTAGTTCATCTCAGGGTAGGAGAAGCGCATCATCTTCTCCCCTTCAAAACACAATGACATGCAGAAATTAGCACAGGAAGCACG

Function

symbol description
ikzf2 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human IKZF2 (IKAROS family zinc finger 2).

NR:

description
PREDICTED: zinc finger protein Helios

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223065 True 2190 lncRNA 0.45 2 3800336 3802599

Neighbor

gene id symbol gene type direction distance location
cps1 cps1 coding upstream 788446 2912007 ~ 3011890 (+)
map2 map2 coding upstream 925270 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1144622 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1326439 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 1608422 2093349 ~ 2191914 (+)
LOC103033219 NA coding downstream 237387 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 576423 4379022 ~ 4448620 (+)
hibch hibch coding downstream 868533 4671132 ~ 4734221 (+)
mstn mstn coding downstream 954145 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 1007949 4810548 ~ 4817692 (+)
G164718 NA non-coding upstream 120301 3650375 ~ 3680035 (+)
LOC111194872 NA non-coding upstream 182646 3615389 ~ 3617690 (+)
G164699 NA non-coding upstream 717386 3082416 ~ 3082950 (+)
G164652 NA non-coding upstream 786720 3012169 ~ 3013616 (+)
G164642 NA non-coding upstream 940968 2858618 ~ 2859368 (+)
G164845 NA non-coding downstream 164897 3967496 ~ 4010020 (+)
G164888 NA non-coding downstream 487717 4290316 ~ 4290564 (+)
G164893 NA non-coding downstream 545650 4348249 ~ 4348655 (+)
G164902 NA non-coding downstream 588783 4391382 ~ 4391679 (+)
G164903 NA non-coding downstream 592713 4395312 ~ 4439720 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1307345 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 1962249 1802787 ~ 1838087 (+)
tspear tspear other upstream 2039776 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2303956 1404101 ~ 1496380 (+)
G164126 NA other upstream 3228143 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 1465440 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 2314765 6117364 ~ 6123051 (+)
G165406 NA other downstream 2342338 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 2357801 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 2537396 6339995 ~ 6345403 (+)

Expression


Co-expression Network