G164845


Basic Information

Item Value
gene id G164845
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3967496 ~ 4010020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223196
tacaggggttggacaatgaaactgagacacctgtcattttaatgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccag
>TU223197
caagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagagatgttcgggtgctaacccggattgtattcaaaaaacataaaaccacagctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatgaaactgaaacacctgtcattttaatgtgggaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccag

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0002520 immune system development biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04640 Hematopoietic cell lineage
ko04611 Platelet activation
ko05144 Malaria
ko05143 African trypanosomiasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU223196 False 212 lncRNA 0.47 3 3973947 4010020
TU223197 True 384 lncRNA 0.46 3 3967496 4010020

Neighbor

gene id symbol gene type direction distance location
cps1 cps1 coding upstream 955606 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1092430 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1311782 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1493599 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 1775582 2093349 ~ 2191914 (+)
LOC103033219 NA coding downstream 29966 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 369002 4379022 ~ 4448620 (+)
hibch hibch coding downstream 661112 4671132 ~ 4734221 (+)
mstn mstn coding downstream 746724 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 800528 4810548 ~ 4817692 (+)
G164725 ikzf2 non-coding upstream 164897 3800336 ~ 3802599 (+)
G164718 NA non-coding upstream 287461 3650375 ~ 3680035 (+)
LOC111194872 NA non-coding upstream 349806 3615389 ~ 3617690 (+)
G164699 NA non-coding upstream 884546 3082416 ~ 3082950 (+)
G164652 NA non-coding upstream 953880 3012169 ~ 3013616 (+)
G164888 NA non-coding downstream 280296 4290316 ~ 4290564 (+)
G164893 NA non-coding downstream 338229 4348249 ~ 4348655 (+)
G164902 NA non-coding downstream 381362 4391382 ~ 4391679 (+)
G164903 NA non-coding downstream 385292 4395312 ~ 4439720 (+)
G164899 NA non-coding downstream 439959 4449979 ~ 4491709 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1474505 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2129409 1802787 ~ 1838087 (+)
tspear tspear other upstream 2206936 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2471116 1404101 ~ 1496380 (+)
G164126 NA other upstream 3395303 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 1258019 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 2107344 6117364 ~ 6123051 (+)
G165406 NA other downstream 2134917 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 2150380 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 2329975 6339995 ~ 6345403 (+)

Expression


Co-expression Network