G164893


Basic Information

Item Value
gene id G164893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4348249 ~ 4348655 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223257
cacaaatttacaagaaggacatggatcagatatattccataagtaaataatagtcctaaggggcctacacaattactaatctttcattaatacttctttctattgttcagtccactcctgatcagttcagttaatttcagccctctccacattttctctctctccagctcaaccatctcttctaccccttctaaataatacattacattacattataatacattaccacaatacttgagatttaaacaaattctaacaaaccctaaaactagccctgaactaatagagtttggaaatgatagttattggctgatcaggcacatcagggcagggcattatatatatatatatgtagatttttctcaaaccctgaatatctatctagctaattctaaagttaagctaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223257 True 407 lncRNA 0.33 1 4348249 4348655

Neighbor

gene id symbol gene type direction distance location
LOC103033219 NA coding upstream 304656 4039986 ~ 4043593 (+)
cps1 cps1 coding upstream 1336359 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1473183 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1692535 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1874352 2440656 ~ 2473897 (+)
vwc2l vwc2l,LOC107660607 coding downstream 30367 4379022 ~ 4448620 (+)
hibch hibch coding downstream 322477 4671132 ~ 4734221 (+)
mstn mstn coding downstream 408089 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 461893 4810548 ~ 4817692 (+)
osgepl1 osgepl1 coding downstream 473648 4822303 ~ 4827751 (+)
G164888 NA non-coding upstream 57685 4290316 ~ 4290564 (+)
G164845 NA non-coding upstream 338229 3967496 ~ 4010020 (+)
G164725 ikzf2 non-coding upstream 545650 3800336 ~ 3802599 (+)
G164718 NA non-coding upstream 668214 3650375 ~ 3680035 (+)
LOC111194872 NA non-coding upstream 730559 3615389 ~ 3617690 (+)
G164902 NA non-coding downstream 42727 4391382 ~ 4391679 (+)
G164903 NA non-coding downstream 46657 4395312 ~ 4439720 (+)
G164899 NA non-coding downstream 101324 4449979 ~ 4491709 (+)
G164907 NA non-coding downstream 103393 4452048 ~ 4454815 (+)
G164910 NA non-coding downstream 153293 4501948 ~ 4503411 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1855258 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2510162 1802787 ~ 1838087 (+)
tspear tspear other upstream 2587689 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2851869 1404101 ~ 1496380 (+)
G164126 NA other upstream 3776056 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 919384 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 1768709 6117364 ~ 6123051 (+)
G165406 NA other downstream 1796282 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 1811745 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 1991340 6339995 ~ 6345403 (+)

Expression


Co-expression Network