G164899


Basic Information

Item Value
gene id G164899
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4449979 ~ 4491709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223263
ATTAATTCTTAAATCAtaagagtgctggatgttaatctacacacttctctcctgaaaactgtttatttgagtaattaAAGATTCCATTTATTTCCGttgttagcagcagtgctagccacagttagcaccagcactagccatggttagctagcttactgCTAGTAAACGcagcccgacagcgctacacttaCCTGTATAACACCAATGTAGATCCCAATGTAGGTCACTCTGGATTAACTCCGGAAAAGTGTCAACCCAATATCAGAGCCATTAATGTGAATGTAATTATACCTTAATGACTGCCTCCAGAGTGGCTTGTCACGTAATCAGACTGTTACACCGCACACAAGCGCAATTAGTGAGCAGTGCTAGTCTTCACAGACTGGAAAAAGCTTCATGGAGGTTTTGTTTCCAGGCCGTGGAAGCCAACAAGACAAAACGCTGCGGCATTAATTCAGATTACCCCCTGcccccccagcccaAACAAGCAAAAGTCCTCCTAAAGGCCAACAGCTTGAACTTATCTCAGCAATTAGCAAGCCCCAAGCAGGCTgctttaattttactcaatcaGGCAATATTCGCTGATAAATTAGCCGGCAGACACGCGGCGCAGCAGGCAAGGAGCTGAACCAAAGGCGGGAATCTACACCCAGCCTGCTGCTTCAAAGCCACATCCTTAAACGCTTCCTCTCATCCTCGACACGCCGTAGTCCCGGCTtgtggcaattttttttttttcctttccgcAGCTTTTGAGCGACCACATGTTGATCCAGCGAAGTGCTTAAACCACTAAAGAATGCCTCTAGAACCACTTAAACCAATAATCCTCAGAGTAGACTCTGAAGCTGAAACAATGTTTTTTGCTCACTGCGAAATGCTCACGAATGATCCGCGTAGATGCTCCGCGCCGTGGCGCCAAGGCCCGAGCCTTCGTTCGGAATAAGAAAATGCATTGCTTATAGATTCTTTGGTTCAGCTCGAGGGGACCGACCAACCTGCCTGAACAGAAAACAGCGCCTGCTTCCCTTCTTCTTCCCAGATGATAAATACCAGTCATTAATTCAAAGGCGAATTCCACCAAGCCCACGCCATTTATCAGAGGTATTTGCGACCAAAAGAGAATTCATCCCAGTTAACCTTTTAGACCCTGTTGCCCAGCAGTGATGGATGAGCTGCTTAATAACAGATCCATGGCTTTAGTAATGAGgtgaaaataaatgcaatagCATGAcctagaagaagaagaaaacgaagaagaagaaaaagaaggatggaCCAGAAGTGTCCATGTAATTTCACTTAGCGCCATTTTAAACCCACAGCTTCAGCATTAGGTCATACCCCAATTCGAGGTCATTATTATGCAAATTTCAATATATCTCAAATCGTCTAACTTATTActggttaTGCTGGTTCACAGCCTCCAGCCTCATCTTCTTCAGGTTCTGCTTGGTCTGATTCCTGGTGGGCGGCCTAGGTCTGTCACTGGCCGCTTTGCTGGCAGCCCCCATGCTGCGTTTCTTCCTTTTCCTCTTCCTTCCATCACTTCCTCCTTCCCTTTGAGGAGAAGAAGATCCAGAATCCTGAGAGGAGGAGTTGAAGTTGAAGACAGACAGGAGTTTCGGGTCTTTGGTTTTGGATGCGGGCTCAGATGACCCAGTAGGACTTTTTCCCGTCTGCAGGGTCACCTCCACCTGTTTCTCCACTCGGCAGCGCACTTTGCGGCTCCTTGGACTGAACCAgatcttgaaattcttcttgtGCTTGAGGACAGAGGACTCGTTTGGAGATGTGGAGGATTCTGCATTCTGAGGGTCT

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU223263 True 1824 lncRNA 0.46 3 4449979 4491709

Neighbor

gene id symbol gene type direction distance location
vwc2l vwc2l,LOC107660607 coding upstream 1359 4379022 ~ 4448620 (+)
LOC103033219 NA coding upstream 406386 4039986 ~ 4043593 (+)
cps1 cps1 coding upstream 1438089 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1574913 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1794265 2604058 ~ 2655714 (+)
hibch hibch coding downstream 179423 4671132 ~ 4734221 (+)
mstn mstn coding downstream 265035 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 318839 4810548 ~ 4817692 (+)
osgepl1 osgepl1 coding downstream 330594 4822303 ~ 4827751 (+)
LOC103025618 LOC108436803 coding downstream 362694 4854403 ~ 4859014 (+)
G164903 NA non-coding upstream 10259 4395312 ~ 4439720 (+)
G164902 NA non-coding upstream 58300 4391382 ~ 4391679 (+)
G164893 NA non-coding upstream 101324 4348249 ~ 4348655 (+)
G164888 NA non-coding upstream 159415 4290316 ~ 4290564 (+)
G164845 NA non-coding upstream 439959 3967496 ~ 4010020 (+)
G164910 NA non-coding downstream 10239 4501948 ~ 4503411 (+)
G164944 NA non-coding downstream 125094 4616803 ~ 4650893 (+)
G164952 NA non-coding downstream 206623 4698332 ~ 4736710 (+)
G164990 NA non-coding downstream 402436 4894145 ~ 4896061 (+)
G165013 NA non-coding downstream 525025 5016734 ~ 5056807 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1956988 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2611892 1802787 ~ 1838087 (+)
tspear tspear other upstream 2689419 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2953599 1404101 ~ 1496380 (+)
G164126 NA other upstream 3877786 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 776330 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 1625655 6117364 ~ 6123051 (+)
G165406 NA other downstream 1653228 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 1668691 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 1848286 6339995 ~ 6345403 (+)

Expression


Co-expression Network