G165283


Basic Information

Item Value
gene id G165283
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5750683 ~ 5753452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223753
tctcTTCAAACTGACAGAATATCAAACATAAATTTCGGCTCCCCTTAATCCGAcagaataccaaacacacaaacacagctccCCTCAAACTGACAGTTACAGTAATCAAAATGCCATCTCGTTCCACTGTACTCAGGTTTGAGGTCACACGACTTATTCAGACTCATGTTTTCAGTTTCACGTTCACggtggtctaaaaaaaaaaaaaaaaaaaaaaaagcaaacaaacaaaggaaACCTCAGTTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223753 True 248 lncRNA 0.38 2 5750683 5753452

Neighbor

gene id symbol gene type direction distance location
btla NA coding upstream 111745 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 313451 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 445574 5300599 ~ 5305109 (+)
LOC111194874 NA coding upstream 517044 5219361 ~ 5233639 (+)
LOC111194953 NA coding upstream 736104 4996621 ~ 5014579 (+)
maats1 NA coding downstream 48439 5801891 ~ 5834662 (+)
nr1i2 NA coding downstream 82029 5835481 ~ 5862907 (+)
LOC103026554 LOC108423842 coding downstream 536098 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 542734 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 875154 6628606 ~ 6733187 (+)
LOC111194877 NA non-coding upstream 3406 5744902 ~ 5747277 (+)
G165273 NA non-coding upstream 20694 5712680 ~ 5729989 (+)
G165276 NA non-coding upstream 30709 5719045 ~ 5719974 (+)
G165238 NA non-coding upstream 101447 5611312 ~ 5649236 (+)
G165229 NA non-coding upstream 165565 5583527 ~ 5585118 (+)
G165316 NA non-coding downstream 112014 5865466 ~ 5868000 (+)
G165323 NA non-coding downstream 118789 5872241 ~ 5931151 (+)
G165326 NA non-coding downstream 123972 5877424 ~ 5878740 (+)
G165343 NA non-coding downstream 244575 5998027 ~ 6004101 (+)
LOC111194857 NA non-coding downstream 349736 6103188 ~ 6105756 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 451955 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3257692 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 3912596 1802787 ~ 1838087 (+)
tspear tspear other upstream 3990123 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 4254303 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 363912 6117364 ~ 6123051 (+)
G165406 NA other downstream 391485 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 406948 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 586543 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1631681 7385133 ~ 7485349 (+)

Expression


Co-expression Network