G165323


Basic Information

Item Value
gene id G165323
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5872241 ~ 5931151 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223811
CATTTCCAAGCTATCCTACTCTTTATTTAATGCAAATTACAGTACCAGGTAACTATTCTCTGAATCCGAGTCACACCAAGGACCAAAACTGACATATTTACAAGGAAAGGAGACATTTAGCATACCttcacagaaagaaaaaaaatgtatatatttaaaataaaataaaaatttcagTCACAAACAGAGGCATTCAAGTAGTAGTAATGTTAAAcaggttgtattttttttttcttcttttttcttttaaatcaaGACAGTCTTCCCCCTCAACAACGTTTGTAATGTGATGTCTGTATATAACCGACAGTCtttgtacattattatttttaatttttttgtattttctgtttaaaacctttgtctctttaaattttttttaactcttatttAACTTTAGTCACAAGAAGTGGTCACACTGTCTGTGAAAAGGAACACATCTATGAATGCGTATCTTACAAGCAAGCTTTTACACACGGGTTGAAGGAATAGAGGATCGGGAGGTGCTACGTGACGCCCCTTGAACACGGCTGTTGGCTGGTCATCACACTGAGTGCAAACAAGTGCAGAAGCtcgcgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatattgcagatgAGGGGTGATGGGACTTCGGTGGGTCTAAAGTGAACAAAAGACCTTTTATTGGACAGGATTAAAACTTCTGGCTCCAGGGCTAAAATTGGATCTGATTGTTCACAATGCTTTAAAAGTGATTCTATATcattcaaaataaattaaaatgtaagcaGGGTTTAAAAGGcgaatataactttttttttattgcatttcctCCACAGCTATTAGATTCTGAAGTACCATTTAAATATGCTACCATGCATGCTCCATTTCAAACATTTAGCTCCATTCATGACGCTGTGCAAGACCAGAACAGATACACCAGTGTGTTTCTCAATTTTAGACCTGGAGGcaccctgccctgcacattttagtgctttttctTCTTGCTTGCACTGCAACTGAttagtttaataaaatgtgcaggacagaGTGCCTCCAAGACCAGGGCCGAGAAAACTTGATACTTtggttaaacattttattataaacaacTGTTCTGCATGTATCGCCTGGAGCTGGTGCACCAcaaccttaaaaataaaagtgcaacaAACTTATAGTTATATAAGTAATGCTCCATTTTTGTAAAGGTGATGAAGtgtaaagaaccttttaaatTGCTGAACCATTATCCCTCACACTTATGTTTGTACAAAATAAGGTTCTTATGTTGCTTCACTCCAAGAACCCTGTgttgtagcacctttatttttaagagtgtagaaCATGGTATAGTTTTGATGGAGAAAGCAAGAACATAGGAGCTTCTAGGATGGACCAGTCAACAGCAGCTGCAGAGGGTCATCACTCAGGAGGGGTTACAgtaggggtgtgcca
>TU223812
CATTTCCAAGCTATCCTACTCTTTATTTAATGCAAATTACAGTACCAGGTAACTATTCTCTGAATCCGAGTCACACCAAGGACCAAAACTGACATATTTACAAGGAAAGGAGACATTTAGCATACCttcacagaaagaaaaaaaatgtatatatttaaaataaaataaaaatttcagTCACAAACAGAGGCATTCAAGTAGTAGTAATGTTAAAcaggttgtattttttttttcttcttttttcttttaaatcaaGACAGTCTTCCCCCTCAACAACGTTTGTAATGTGATGTCTGTATATAACCGACAGTCtttgtacattattatttttaatttttttgtattttctgtttaaaacctttgtctctttaaattttttttaactcttatttAACTTTAGTCACAAGAAGTGGTCACACTGTCTGTGAAAAGGAACACATCTATGAATGCGTATCTTACAAGCAAGCTTTTACACACGGGTTGAAGGAATAGAGGATCGGGAGGTGCTACGTGACGCCCCTTGAACACGGCTGTTGGCTGGTCATCACACTGAGTGCAAACAAGTGCAGAAGCtcgcgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatattgcagatgAGGGGTGATGGGACTTCGGTGGGTCTAAAGTGAACAAAAGACCTTTTATTGGACAGGATTAAAACTTCTGGCTCCAGGGCTAAAATTGGATCTGATTGTTCACAATGCTTTAAAAGTGATTCTATATcattcaaaataaattaaaatgtaagcaGGGTTTAAAAGGcgaatataactttttttttattgcatttcctCCACAGCTATTAGATTCTGAAGTACCATTTAAATATGCTACCATGCATGCTCCATTTCAAACATTTAGCTCCATTCATGACGCTGTGCAAGACCAGAACAGATACACCAGTGTGTTTCTCAATTTTAGACCTGGAGGcaccctgccctgcacattttagtgctttttctTCTTGCTTGCACTGCAACTGattataaacaacTGTTCTGCATGTATCGCCTGGAGCTGGTGCACCAcaaccttaaaaataaaagtgcaacaAACTTATAGTTATATAAGTAATGCTCCATTTTTGTAAAGGTGATGAAGtgtaaagaaccttttaaatTGCTGAACCATTATCCCTCACACTTATGTTTGTACAAAATAAGGTTCTTATGTTGCTTCACTCCAAGAACCCTGTgttgtagcacctttatttttaagagtgtagaaCATGGTATAGTTTTGATGGAGAAAGCAAGAACATAGGAGCTTCTAGGATGGACCAGTCAACAGCAGCTGCAGAGGGTCATCACTCAGGAGGGGTTACAgtaggggtgtgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223811 True 1443 lncRNA 0.36 2 5872241 5931151
TU223812 False 1364 lncRNA 0.36 3 5872241 5931151

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 9334 5835481 ~ 5862907 (+)
maats1 NA coding upstream 37579 5801891 ~ 5834662 (+)
btla NA coding upstream 233303 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 435009 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 567132 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 358399 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 365035 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 697455 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 830200 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 907235 6838386 ~ 6884350 (+)
G165316 NA non-coding upstream 4241 5865466 ~ 5868000 (+)
LOC111194876 NA non-coding upstream 109390 5747321 ~ 5762851 (+)
G165283 NA non-coding upstream 118789 5750683 ~ 5753452 (+)
LOC111194877 NA non-coding upstream 124964 5744902 ~ 5747277 (+)
G165273 NA non-coding upstream 142252 5712680 ~ 5729989 (+)
G165343 NA non-coding downstream 66876 5998027 ~ 6004101 (+)
LOC111194857 NA non-coding downstream 172037 6103188 ~ 6105756 (+)
G165402 NA non-coding downstream 196684 6127835 ~ 6128123 (+)
LOC111194880 NA non-coding downstream 206135 6137286 ~ 6142409 (+)
LOC103046189 NA non-coding downstream 214996 6146147 ~ 6158276 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 573513 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3379250 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4034154 1802787 ~ 1838087 (+)
tspear tspear other upstream 4111681 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 4375861 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 186213 6117364 ~ 6123051 (+)
G165406 NA other downstream 213786 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 229249 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 408844 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1453982 7385133 ~ 7485349 (+)

Expression


Co-expression Network