LOC103046189


Basic Information

Item Value
gene id LOC103046189
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6146147 ~ 6158276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223962
CTGATCCTGTACACGGCCTCCTCAGCTGCAGGAGCTGTTGCAGTATTCTGTATTATCCTCTGCACTGTGTGGATTCACAGAAAATGCAAAACAAGAACCAGGAAAAATGAAGTTGAGCTtcaGCAGCCACATGGAAGAAGAATGGACAACGTTCAGGACAGACAATattttgagagatttaattctTTATATGGACAAATTGTCTCATGAATCCGGAACAGACTCCTCAGGCTCTTCTGGAAAGACCCTACACTAAATGTTTCGTCATTGCTCTGATGATTCGAGTTCATTCAGGCATGAGGTCCTTAGTGAGGTCAGGTTCTGATTTTGGATTCATCAGTTCCACCACCCAAAGTActgaatggagctccatcatttcagagaacacagttcctctgaccagcagctcaatgctggggccTTTTACCCCAGCGTACTCCACTGGACACTCTGCATTGGACACGGTGAATTTTCGCTGAAGTGCAGCAGCTTCTCCAGGGCTTTTCAATGTAGTGCCACAACTTTTTAATGGAGAATGTACAGCCTGTGTTAGCACCTTAAAGTAGCTGAAGATGTAATGTTGGACATATATAGACACATGCATAcatgtatttaaattatgtttatctGTACTCATTAAAGCATCTCCTCTTCTGTACGTGGGGGACTGCTTTCCAGCAGGTTTCATATCATGTAAATGTAATCTGATGCACTTGAACTGTTTGATTGTTTAATGCAGATTGAATGCACTTTTTGCAATGAACCAGCACCACCAAGAAACATTAAATCCAGatgtctggtaaaa
>XR_002651308.1
TGATCCTGTACACGGCCTCCTCAGCTGCAGGAGCTGTTGCAGTATTCTGTATTATCCTCTGCACTGTGTGGATTCACAGAAAATGCAAAACAAGAACCAGGAAAAATGAAGTTGAGCTtcaGCAGCCACATGGAAGAAGAATGGACAACGTTCAGGACAGACAATattttgagagatttaattctTTATATGGACAAATTGTCTCATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223962 True 805 lncRNA 0.42 4 6146147 6158276
XR_002651308.1 False 210 lncRNA 0.41 3 6146148 6154312

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 283240 5835481 ~ 5862907 (+)
maats1 NA coding upstream 311485 5801891 ~ 5834662 (+)
btla NA coding upstream 507209 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 708915 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 841038 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 131274 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 137910 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 470330 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 603075 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 680110 6838386 ~ 6884350 (+)
LOC111194880 NA non-coding upstream 3738 6137286 ~ 6142409 (+)
G165402 NA non-coding upstream 18024 6127835 ~ 6128123 (+)
LOC111194857 NA non-coding upstream 40391 6103188 ~ 6105756 (+)
G165343 NA non-coding upstream 142046 5998027 ~ 6004101 (+)
G165323 NA non-coding upstream 214996 5872241 ~ 5931151 (+)
G165416 NA non-coding downstream 31904 6190180 ~ 6190692 (+)
G165426 NA non-coding downstream 32526 6190802 ~ 6192416 (+)
LOC111188246 NA non-coding downstream 83568 6241844 ~ 6243216 (+)
G165418 NA non-coding downstream 85251 6243527 ~ 6243915 (+)
G165432 NA non-coding downstream 86975 6245251 ~ 6245640 (+)
G165406 NA other upstream 178 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 23096 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 847419 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3653156 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4308060 1802787 ~ 1838087 (+)
LOC111194881 NA other downstream 2124 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 181719 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1226857 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1518510 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1871119 8029395 ~ 8034584 (+)

Expression


Co-expression Network