LOC111194881


Basic Information

Item Value
gene id LOC111194881
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6160400 ~ 6237986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223975
CGGCAGTGGAGTGCGTGGAGAGACTGTGAAGCGTCGTAATAAGGAATATCTCATTTTGATCCAGTTTGAATCTGAATCTGCTGGCGTGCTGAATCCGGTCAGGTTGACATCTGAAATCAAATCAGCTCTAGGGGATGTGGCCGGAGCTATGGTGTTGAGAGGAGCCATTTATGTCGCTGGTCGGAGCTCCACTGTTACAGTAGGCGAGGACGCTATCTTGTTCTGCCAGCTGATTGGAACAACTGAGAGACTAACACGGATTACGTGGCAAAGAAGGACACACACAAGTTCCacaaatgagaatatttttgtcATCATCCCATACGATAAAGCAGAAAGTGTAAACGGATTTGGAGACAGAATAGAATTTGTTGGAAACACAAAAGAATATAACGGCACAGTTCGTATGAAGAACGTCACATCATTAGACCATCAAATCTACACATGCATCTTCAACATCTTCCCAAGTGGGCCttttgaaaaagaaataaatcttaACGTATACGTGATCCTAGTTTCCTGCATTGCAACATCTCGACCTGCATCAGAAGTG
>XM_022680117.1
tgtcATCATCCCATACGATAAAGCAGAAAGTGTAAACGGATTTGGAGACAGAATAGAATTTGTTGGAAACACAAAAGAATATAACGGCACAGTTCGTATGAAGAACGTCACATCATTAGACCATCAAATCTACACATGCATCTTCAACATCTTCCCAAGTGGGCCttttgaaaaagaaataaatcttaACGTATACGTTCCTCCTGAGGTCAGTGTATTTCCTGATGTTACTCCTGTTGTTGGTGATTCTGAAGTGATCCTAGTTTCCTGCATTGCAACATCTCGACCTGTATCAGAAGTGACCTGGAATCTGGGTGATCTCAATAGCTCTCTGAAGATAAAGACTGATGTGTCTGCAGGACCTAACGATTACTACACTGTCAGCAGCCGCCTGATTGGTGTACCATCCAAAGAGCTAAACGAGCAGAATGTCCAGTGTGTGGTCAATCACACCAGTCTAAAAAAGGAGATTGTTCTAAACTATGCACTCGTCATTCATTATCCTCCCCAGATTGTGTATATTACTTCAGTTAATCCTCCCACAACGCATCAAGAATTCCTTTGTATAGCAGTTGCCAATCCAAAACCAACGCTGTACATCTGGAGCAGGGTGAACAAGACTCTTACTGGCAGAGTTGATGTTGATAGGCTGGAAATTCCACTAAACTCTGACAGCAACGGCTTGTATAAGTGTAACGCTTCAAACCAGTATGGTAATGGAGTAGGAACTCTACGCATGCAGATTTCCACTGACTGTACCACCTGTTGGACGTCTTGCATCATTTGCATCTTTGTATCTGCTACTGCTCCTTTTTTATTATGGAAATGTTTCTCATCTGAAACATGCACCAAACAAATTTCAGATCTGAGAGAAAGAATTTTAACACTGCAGAGAACCTCGCCTCCATAGCCAAGAGCTCTACAGTGTTTCTACTACTTCCTGCGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223975 False 553 TUCP 0.44 4 6160400 6237986
XM_022680117.1 True 949 mRNA 0.42 6 6179955 6199753

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 297493 5835481 ~ 5862907 (+)
maats1 NA coding upstream 325738 5801891 ~ 5834662 (+)
btla NA coding upstream 521462 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 723168 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 855291 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 51564 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 58200 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 390620 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 523365 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 600400 6838386 ~ 6884350 (+)
LOC103046189 NA non-coding upstream 2124 6146147 ~ 6158276 (+)
LOC111194880 NA non-coding upstream 17991 6137286 ~ 6142409 (+)
G165402 NA non-coding upstream 32277 6127835 ~ 6128123 (+)
LOC111194857 NA non-coding upstream 54644 6103188 ~ 6105756 (+)
G165343 NA non-coding upstream 156299 5998027 ~ 6004101 (+)
LOC111188246 NA non-coding downstream 3858 6241844 ~ 6243216 (+)
G165418 NA non-coding downstream 5541 6243527 ~ 6243915 (+)
G165432 NA non-coding downstream 7265 6245251 ~ 6245640 (+)
G165450 NA non-coding downstream 9279 6247265 ~ 6247508 (+)
G165469 NA non-coding downstream 81333 6319319 ~ 6325758 (+)
G165406 NA other upstream 14431 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 37349 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 861672 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3667409 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4322313 1802787 ~ 1838087 (+)
wdr4 wdr4 other downstream 102009 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1147147 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1438800 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1791409 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2742576 8980562 ~ 9067879 (+)

Expression


Co-expression Network