G165426


Basic Information

Item Value
gene id G165426
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6190802 ~ 6192416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223984
AATATTCTGGCCCCTttgaaaaaagtttggacacccctgcaatCAGTGTTTGTGCACACTCTACATAAATGCATTTTTCCACTGTacttaagttgcacccattgctgacacagatggaCACTTGTCTaagtgtaatttgtaatttttaagctATATCCATCATTATCGTTTCCTCTGCACCTTCTTTATGGGTCAGGTTCTAGAGCCTACTTTAAATCACAGGGCACAGGGCAGGAATACCCCCTAGACAGGATGCCAGTCCATAACAAAATATCATGTACAATCATTTCCTCACACCTAGGGTGCAGTTTTGCAAGGCCAGTTCACCTAAAACATGTAGTTTTGAGAGGTGAGAGGAAACTGGAGACCCCAAAGGAAACACCATATTCCTGACAGTGTGACTGGAGCAGGGTTCTAACCCACAACCCCAGACCCCTAGAGCTGTGCAACACATGCAGTAGCATCAGAGAGCCCATCCATatctttaaatatgtttaatatggtTTTCTAATCTCTTGTCCGAATGTTCTGATGTCTGTTTTGAACCAGTTCCCCTCTAGAGATATCAGACTTCTTGTTTATTTGGTAGATTGATAGTCACATTTTTTCTTGCAGTGGTCTAGGTTTCAACTTAGTGAAGGACAAATTGCTGATTTATCAACAAGCTAGTTAATAAGTAGTTTTCATGTTCATTGTGAACATAAGGAAAGGTGAGGGTGAAAATATCGATTTTCCTCTCTAGATCTGTGTAGATGTCTGAACAGTGAATCATCTGGTCATCAAGTCATTGCGATGTGCGCATGTGCAATGTCacctaaggcaattaaatcaaacacatcttcatgcagtgttttgatttttggcacaagaagtagatacacagcgctgtctctgtgtctgtgtgagtgacaggctgctgctccCTTAGAAGCGTGAGAGGGGGCgagcaggagtaaacacaaggtaacgtggacacgtgtcgaaagctgtgtacctcagtccagcacagttttgcgcagatatttccagttacagctgtattcacacttttaatcttAGAAAATGCTTAtaatcttatttaccttttaaaaagccaattAAGTGCCTGATTAAAGGacgattattgttgttttgctgttttcctggGGTttggggctggtgacgtcatgggccctgcattgtttaatttcACGATGtatatattgtccaaaaaaaaaaaacatttgcaaggtattttttttcaatatcgtgcagccctaataccAAGGTTCTAAATTTAACCATGTCTAATCTAACACTGATCAGTGCTTCTAATAACACCATGAACGTATGTGAGAGGAGGATGTGCAACAGAGCAGCGCCTTTTGTCTAGAAATGGAAGACAAGCTTTTAGTGTGAAACTTGCCCTGACACTTTTAACGACCAGCCTGAAAACAAAGCTCAAAATACATTGATAACTggacaaaccaaaccaagtaaAGCAGATCCAAACCAACTTATCTTATACCCTGCTTAAAGCAGAGTTGCGATGCTTATTGCTCTCTTACAACCCCAACATTCTATTTTAACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223984 True 1571 lncRNA 0.40 3 6190802 6192416

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 327895 5835481 ~ 5862907 (+)
maats1 NA coding upstream 356140 5801891 ~ 5834662 (+)
btla NA coding upstream 551864 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 753570 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 885693 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 97134 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 103770 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 436190 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 568935 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 645970 6838386 ~ 6884350 (+)
G165416 NA non-coding upstream 110 6190180 ~ 6190692 (+)
LOC103046189 NA non-coding upstream 32526 6146147 ~ 6158276 (+)
LOC111194880 NA non-coding upstream 48393 6137286 ~ 6142409 (+)
G165402 NA non-coding upstream 62679 6127835 ~ 6128123 (+)
LOC111194857 NA non-coding upstream 85046 6103188 ~ 6105756 (+)
LOC111188246 NA non-coding downstream 49428 6241844 ~ 6243216 (+)
G165418 NA non-coding downstream 51111 6243527 ~ 6243915 (+)
G165432 NA non-coding downstream 52835 6245251 ~ 6245640 (+)
G165450 NA non-coding downstream 54849 6247265 ~ 6247508 (+)
G165469 NA non-coding downstream 126903 6319319 ~ 6325758 (+)
G165406 NA other upstream 44833 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 67751 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 892074 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3697811 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4352715 1802787 ~ 1838087 (+)
wdr4 wdr4 other downstream 147579 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1192717 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1484370 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1836979 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2788146 8980562 ~ 9067879 (+)

Expression


Co-expression Network