G165432


Basic Information

Item Value
gene id G165432
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6245251 ~ 6245640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU223990
AGGATGTTTTATATGCagcgtatttttttttgtactgctgTGTACAAAATGGCAGTAAGAAAATTGTATTAATGCATTTGTATGCTATTGTAAATTACTGAGTTTTTCaacttgtgtattttttttatttaaacaggcTGCCTCTGTTGctgatttaatataaattaaatctgttttgATTTGTTGCTCTGTCTTGCATCTTCTTTATAAAGCACTCAGAACTGCAACACTTTTGAGAACTATGGTAAGTGGGCAGTAGTGTAGAAGTCTGTGGTAGTCagaatagaccactgaagtcattCATTATTCTGCAGTCCTTGTTTTACTCATATTTGGTGCTTAAACAATTGCCTGCAATGCATTTTTGAATTTAAATTGATCTTTATGTAA

Function

NR:

description
PREDICTED: protein Shroom3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223990 True 390 lncRNA 0.32 1 6245251 6245640

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 382344 5835481 ~ 5862907 (+)
maats1 NA coding upstream 410589 5801891 ~ 5834662 (+)
btla NA coding upstream 606313 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 808019 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 940142 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 43910 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 50546 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 382966 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 515711 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 592746 6838386 ~ 6884350 (+)
G165418 NA non-coding upstream 1336 6243527 ~ 6243915 (+)
LOC111188246 NA non-coding upstream 2035 6241844 ~ 6243216 (+)
G165426 NA non-coding upstream 52835 6190802 ~ 6192416 (+)
G165416 NA non-coding upstream 54559 6190180 ~ 6190692 (+)
LOC103046189 NA non-coding upstream 86975 6146147 ~ 6158276 (+)
G165450 NA non-coding downstream 1625 6247265 ~ 6247508 (+)
G165469 NA non-coding downstream 73679 6319319 ~ 6325758 (+)
G165474 NA non-coding downstream 102363 6348003 ~ 6348651 (+)
G165484 NA non-coding downstream 143062 6388702 ~ 6388998 (+)
LOC111194884 NA non-coding downstream 154854 6400494 ~ 6412938 (+)
LOC111194881 NA other upstream 7265 6160400 ~ 6237986 (+)
G165406 NA other upstream 99282 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 122200 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 946523 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3752260 2490044 ~ 2492991 (+)
wdr4 wdr4 other downstream 94355 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1139493 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1431146 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1783755 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2734922 8980562 ~ 9067879 (+)

Expression


Co-expression Network