G165469


Basic Information

Item Value
gene id G165469
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6319319 ~ 6325758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU224036
GTTAAATGAACCACTTTAATAGAATTACAAGCATTCCAACACACTGGAAGCTGCAGTGTAGTCAATCAACCAAAAGACAAACAGGACTGCAGCAAAGGCTGGATGGCTTTGAGGACTGGGGTATAGTGAGGAATGAGATTGGGCTGCTGCTGGGGGAGGGATCAGTGCCTGGGTGAGGGTCTTCCAGAGGAAGGTTGGGGTAGACGGTGCTTGGCCATCTCCACATCCATGTCTACGAAGGTGTAAATGTTGTAACTGTGGTGCTGCAGATTCTTGTAGGAAGTGTTGTCGAATGGTTCTGGTTCAGGTGCTGCAGCAGGGGCAGGACTTGCAGCTTTTGCTTTCTTTGCTGGTTTCTTCGGCTcctcagttttagtgcagaGTGCTGCAGTGAGTGGGGTCCTGAGAGCGCCCCAGCTGCCCTGCTGGAGACACtgatcaaaaacaaaacaaatatttaaaggtTTTGGAATTATATCAagtttataatgaaaaaaaaagcggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacggggcaaagagtctaaaagcggagaggatgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggg
>TU224037
GTTAAATGAACCACTTTAATAGAATTACAAGCATTCCAACACACTGGAAGCTGCAGTGTAGTCAATCAACCAAAAGACAAACAGGACTGCAGCAAAGGCTGGATGGCTTTGAGGACTGGGGTATAGTGAGGAATGAGATTGGGCTGCTGCTGGGGGAGGGATCAGTGCCTGGGTGAGGGTCTTCCAGAGGAAGGTTGGGGTAGACGGTGCTTGGCCATCTCCACATCCATGTCTACGAAGGTGTAAATGTTGTAACTGTGGTGCTGCAGATTCTTGTAGGAAGTGTTGTCGAATGGTTCTGGTTCAGGTGCTGCAGCAGGGGCAGGACCCTCAGGTGCTGCCGCTACTTCAGTCTCCGGTGAGCGTTCTCCTGCATCTGCGATTGTGGGAGCAGTGTCGACCAGCTCCTCCTCTGCAGGTGGAGCAACTTCTGTTTCAGCTTTAGGTTCAGATGGAACTTCTTTATCAGAGTCAAAGACGACCTCTGGTTCAACTTTGGCTTGTACGTCAGGGATTTCTTCAGCAATATCTGCAGCTGATTTGGTACTAGCTTCTGGAATCACTTCAACATCTGGCACAGCTTTGGCTTCTGAAATCACTTCAGATTCAGACACAGCTTCAGGCACAATTTCTATTTTGGCTTCTGAGGTCTTCACCTCCATAACTGGTTCTTTTTCAGTGACAACCTCTTCTGCAGCTTCTGTTTTAACTTCTGGTGCAACATCAGTCACCTCCTCAGGGGGTGAAGCTTTTGGGGGTTCTGGAGGTGTTTCAGGAACTGTTGTTTCAGAAACATCTGTAGTTAAGACTGGGGCAGGGTCAATAATCTCCTCAGTGCTTGCAGCTTGCTTGGGCCCTTCTACTGCAGTACTTGGGGCAGTAGCTTCAGTCGCAGCTTCTGGAGGTCCCTTGTCAGAGGGCTCAGGCACGCTGGTGGATTCTGTCGCCACACTTTCAGGAACAGCTTCAGTATCTTTCACCTCTGAAGAGGAGTCTGTTGGCACCTTCTCCTGGGTTGATTTTTCTTCAGGCTGGACCACAGTTTCAGTCTTCTTAGTCTTGTCTGGTCCTTCatcatcagaatcagaatcagaatcggAATCTGAATcactggaggaggaagaagaggaggaagattCTTGATCCTTTTTGGCACCAGATCCAGTGGCCTCTCCACCTTCAATTGTTTTGCTTGAGGTTTCAATTTCAGCCACTGATTCTTCTACAGGTGTAGCTTCAGGCTGTTTGGTGGTCGCTTCACTCTGGCTGGAGATGGTACTCTCTCCTGTAGTGGAAGCTTCTGCTGAAACTTCATTGGTGGAAGCAGCAGCTTCTGCGATTGTGGCACCTGCAGCAACTACAGTCCCAGCTGCCACAGGATCTGAACTTGGAACAGATTCACCTAAGGCACTGACAATTCCTGGAGTAGAAAGTCTAGTAGGGAAGGCAACAGCGGTCTTGTAGGCTAGTAGAGCAGCCCTTTCATCAGAGGCATCTAAG

Function

GO:

id name namespace
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU224036 False 694 lncRNA 0.48 3 6319319 6325758
TU224037 True 1500 lncRNA 0.49 2 6319319 6324049

Neighbor

gene id symbol gene type direction distance location
tmprss3 tmprss3 coding upstream 11991 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 25551 6289550 ~ 6293768 (+)
nr1i2 NA coding upstream 456412 5835481 ~ 5862907 (+)
maats1 NA coding upstream 484657 5801891 ~ 5834662 (+)
btla NA coding upstream 680381 5628989 ~ 5638938 (+)
ccdc148 NA coding downstream 302848 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 435593 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 512628 6838386 ~ 6884350 (+)
LOC103026442 NA coding downstream 570876 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 587354 6913112 ~ 6916257 (+)
G165450 NA non-coding upstream 71811 6247265 ~ 6247508 (+)
G165432 NA non-coding upstream 73679 6245251 ~ 6245640 (+)
G165418 NA non-coding upstream 75404 6243527 ~ 6243915 (+)
LOC111188246 NA non-coding upstream 76103 6241844 ~ 6243216 (+)
G165426 NA non-coding upstream 126903 6190802 ~ 6192416 (+)
G165474 NA non-coding downstream 22245 6348003 ~ 6348651 (+)
G165484 NA non-coding downstream 62944 6388702 ~ 6388998 (+)
LOC111194884 NA non-coding downstream 74736 6400494 ~ 6412938 (+)
G165487 NA non-coding downstream 90586 6416344 ~ 6418249 (+)
G165494 NA non-coding downstream 117242 6443000 ~ 6443272 (+)
LOC111194881 NA other upstream 81333 6160400 ~ 6237986 (+)
G165406 NA other upstream 173350 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 196268 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1020591 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3826328 2490044 ~ 2492991 (+)
wdr4 wdr4 other downstream 14237 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1059375 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1351028 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1703637 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2654804 8980562 ~ 9067879 (+)

Expression


Co-expression Network