G165487



Basic Information


Item Value
gene id G165487
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6416344 ~ 6418249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU224068
accaaattcttcataaaaagcataaaaaaaagatcactaATAGTTTGTCTCAGGACTttaccgttccaccttaaatggtgcaacagacaagacgcaggggctgcagcatttaaggcggaatggattggaatggaaaaaaaaaaaaaaaaaaacctaatcaaagctaatttcagctcctcataacagaggaattaaggaatggacaataataatttacttattATGCAGCATCTCCCCACTTTATGAAGACATATATtaaagccctaaagttaacttgTTAACCAAAAGCAGCTAGGTTattgaACTTAAGCACTCCTGATGTCctatcgggtgcttgaaggcTTGTCCCAATTCTAATGgagaggatttcaccccttgaCCACTCAAAATAAAGGGGTAGGGGGTAAGTGAGAGGgccaaggggtaaaatgggattgggtccTAGTACACCACCTTGTGCACACCACATCATGAGCTGTACCTTTTATCCTATTTCTCTCTTaacctctctcacactcacttacatacacaaacacacacacagtacagaaCCTCTTCATCTACAAACCTAACTAATCTACATCTACCCAAAACATTAACAACGTCTGAACGAACATCAAAGCTGCTCAGCATTCGAAACGCTCGTAAACACTGCAATCGTGAAGTTACAGACTAGTACAGACACTGAGGCAACATTTCATAGTCTGTCAGAAAGCTAAAAGAATCAGAAATCCCAACACACATatacttatattaaacaataaacacttAATATCCACCACAGCACTGAAGACAcagcatttaaataaacaaataaaagaaatattctTTTATAAATAACATATAAGTTTTGCTTTGGTCTGTAGAAAGGCAGATGGGaatgaaaaacaatatattaacaATGTTCTCACAaatttatatacattaaatacatttgttcGCCCGCCTTGTCCATCCACTGTGTGCTTGAAGGGA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU224068 True 975 lncRNA 0.37 2 6416344 6418249

Neighbor


gene id symbol gene type direction distance location
tmprss3 tmprss3 coding upstream 109016 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 122576 6289550 ~ 6293768 (+)
nr1i2 NA coding upstream 553437 5835481 ~ 5862907 (+)
maats1 NA coding upstream 581682 5801891 ~ 5834662 (+)
btla NA coding upstream 777406 5628989 ~ 5638938 (+)
ccdc148 NA coding downstream 210357 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 343102 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 420137 6838386 ~ 6884350 (+)
LOC103026442 NA coding downstream 478385 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 494863 6913112 ~ 6916257 (+)
LOC111194884 NA non-coding upstream 3406 6400494 ~ 6412938 (+)
G165484 NA non-coding upstream 27346 6388702 ~ 6388998 (+)
G165474 NA non-coding upstream 67693 6348003 ~ 6348651 (+)
G165469 NA non-coding upstream 90586 6319319 ~ 6325758 (+)
G165450 NA non-coding upstream 168836 6247265 ~ 6247508 (+)
G165494 NA non-coding downstream 24751 6443000 ~ 6443272 (+)
G165507 NA non-coding downstream 52517 6470766 ~ 6471725 (+)
G165523 upp2,LOC107699962 non-coding downstream 245998 6664247 ~ 6741801 (+)
G165534 NA non-coding downstream 333163 6751412 ~ 6751783 (+)
G165530 NA non-coding downstream 467599 6885848 ~ 6890770 (+)
wdr4 wdr4 other upstream 70941 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 178358 6160400 ~ 6237986 (+)
G165406 NA other upstream 270375 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 293293 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1117616 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 966884 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1258537 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1611146 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2562313 8980562 ~ 9067879 (+)
G166015 NA other downstream 2619993 9038242 ~ 9085850 (+)

Expression



Co-expression Network