G165530


Basic Information

Item Value
gene id G165530
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6885848 ~ 6890770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU224126
ataaatgtagtcttattttaaagtggtacccaatcaGTCAGTCTATTGTTGATTAAACTGTAAATGAATCACCCAGACAGCTAACAGAAATGTCATTTATGAAGAATATTCCCTTTCTATTTTTGTAAAGCCCTTCCAAGAGTATATATAAAGGACCAATATATCAGAATGTACTTTATATATTGCCTGTAAATTTTGAAACACTACAGTACATGTTGCTTCTCAATCTAATTTTAAAGCAGCTTTCGTGTGAAAGCTCGGAGATTAGCACAGGTCGTGCTTGCTTTAGCAGAGATCGTAGGAAGCCGTGTTGTTTTTCTAATTGTTTCGATTTCTGAACAACTCCTTTCAGCACTATCACTTTCATGTTGCATTGCATGGAGATTTCCATCCGCGAGCGTGACTTCCTGTAAAAGCTGTGTTATTTTTCAGtgtgcaaagaaaagaaaaaaaaaaaaggcctaaCAGCTTTTTGCTTTAGGAGAATAGATGAACTGGACACCCAGTaagctatatttatatatgtattatatatgttaaTTTGTATTAAGTGCAATATCAAGTTCAAAAGCACAACTAAAATTCAGCGTCTGACGcctttttgagatgcattagtGCAGCTTGCGAATGAAAATGTgggggaaaaaatatggttattaatgtgaatgttttttttattcatatactATATGTGCAAATGTATGTGGACACCCATATGCACACACAGATTACAATTCCGTGAAAATTGGAGAGATTtcttatatttgacaatattaccaataaataaaataggactctctggagcagataaacatgagcATATCTATTGGCACCTTGCCTAATTTAATGGTGTGAAACAGGGAAACTGTGAAActatgttctctggaattattgtgattcaattagggatttggggatgagttgtttatgatgctaaatgcaaccaaatcctcacagcagtgcttcaAAACTTGCACTAGTCAAATGCATTTAGTTTATAGTAGAGTTTCTTATTGTAACATGAAtaggataaactatttttaatgctttaaatcatcttggaataaataaataaaataaataagcaggtgttccaatacttttgcccatataGTTTACAGTATTTGCTTTGGAATGTTAATGCATGTAGTATTACACCAACaaaactcaaacacacacacacacacagtctaagTCTTGGGCAAAAGCAGTCCTCAGTTTAAgaacaactctggaaaaaatgagaaagagagaccacttcagtttctgaatcagtttctctgattttgctatttatagatatatagatttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcctaaattccaaataaaaatatagtcatttagagcatttatttggaaaaaatgagaaatgactgaaataacaaacaagatgcagagctttcagaccctcaaataatgcaaagaaaaaaatcatattcataaagttttaagagttcagaaatcaatatttggtggaataaacctagtttttaatcagttttctcatccatcttggcatgttctcctccaccagtcttacacagtgcttttggataactttataactttaaataaagataataataacaattattatCCTTATCCACATGGGCTCTTTTGGCTTGGGGGCCCTCAGTGGCTGTACATTTCTCAACATCTCTGAAATGTGCAGAAAACTGATAAACTGATGAACATGACTCGGACCCTTCACTTGATCTTGTTCCGTTATATGTGGGCAGCGTTGGTACCAGGTGTAATTGCATGGTGTAACTGTTTTACTTCTCCAAAATTCGTCACTCATTCCAAAGAAAAGTCTGCAGGGTTGACCCATGAGGTTGACCGAGGGCTTTGCTCATGTTGGGTAGAGGAAGTGGCTGGTTCCTCTCTGAGAATGTACTGTGACCCTATTCTGAATTTACAGGAGGACACTGAGGGTGGAATTCATGCTCGTCTTTATGTTTCGACTTCAAATCATGAGTGTCTTTTAGATCATGAGTGTCACAtagtattgtattgtactgtcTGAACTGGACTATTTATTGTATTCATATATGAAC

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224126 True 2107 lncRNA 0.35 2 6885848 6890770

Neighbor

gene id symbol gene type direction distance location
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding upstream 1498 6838386 ~ 6884350 (+)
LOC103030586 acvr1 coding upstream 53292 6761351 ~ 6832556 (+)
ccdc148 NA coding upstream 152661 6628606 ~ 6733187 (+)
tmprss3 tmprss3 coding upstream 578520 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 592080 6289550 ~ 6293768 (+)
LOC103026442 NA coding downstream 5864 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 22342 6913112 ~ 6916257 (+)
nr4a2 nr4a2 coding downstream 219388 7110158 ~ 7118514 (+)
LOC103038369 fam126b coding downstream 412815 7303585 ~ 7376769 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding downstream 596648 7487418 ~ 7490552 (+)
G165534 NA non-coding upstream 134065 6751412 ~ 6751783 (+)
G165523 upp2,LOC107699962 non-coding upstream 144047 6664247 ~ 6741801 (+)
G165507 NA non-coding upstream 414123 6470766 ~ 6471725 (+)
G165494 NA non-coding upstream 442576 6443000 ~ 6443272 (+)
G165487 NA non-coding upstream 467599 6416344 ~ 6418249 (+)
G165643 NA non-coding downstream 193231 7084001 ~ 7084301 (+)
G165648 NA non-coding downstream 282010 7172780 ~ 7173360 (+)
G165656 NA non-coding downstream 356964 7247734 ~ 7247939 (+)
G165688 NA non-coding downstream 603871 7494641 ~ 7535072 (+)
G165692 NA non-coding downstream 636421 7527191 ~ 7527677 (+)
wdr4 wdr4 other upstream 540445 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 647862 6160400 ~ 6237986 (+)
G165406 NA other upstream 739879 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 762797 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1587120 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 494363 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 786016 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1138625 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2089792 8980562 ~ 9067879 (+)
G166015 NA other downstream 2147472 9038242 ~ 9085850 (+)

Expression


Co-expression Network