Gene
RNA
| Item | Value |
|---|---|
| gene id | G54958 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 7225141 ~ 7227087 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU62528 | True | 1313 | lncRNA | 0.46 | 2 | 7225141 | 7227087 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_07111833_07115320 | NA | coding | upstream | 109719 | 7110351 ~ 7115443 (+) |
| CI01000009_07101768_07105835 | NA | coding | upstream | 119132 | 7101269 ~ 7106009 (+) |
| CI01000009_07091022_07092696 | NA | coding | upstream | 132340 | 7090918 ~ 7092801 (+) |
| CI01000009_07051811_07054331 | NA | coding | upstream | 170516 | 7050718 ~ 7054625 (+) |
| CI01000009_06975071_07009147 | ARHGAP15 | coding | upstream | 215724 | 6975071 ~ 7009417 (+) |
| CI01000009_07316335_07346664 | ACVR2A, ACVR2AA | coding | downstream | 89248 | 7316335 ~ 7346664 (+) |
| CI01000009_07361747_07377615 | EPC2 | coding | downstream | 134660 | 7361747 ~ 7378451 (+) |
| CI01000009_07392574_07395739 | MED4.S, MED4 | coding | downstream | 165394 | 7392481 ~ 7395770 (+) |
| CI01000009_07440170_07459782 | HTR2A, HTR2AA | coding | downstream | 212952 | 7440039 ~ 7460409 (+) |
| CI01000009_07490344_07493862 | ESTD, ESD | coding | downstream | 263161 | 7490248 ~ 7493862 (+) |
| G54952 | NA | non-coding | upstream | 13491 | 7211402 ~ 7211650 (+) |
| G54946 | NA | non-coding | upstream | 23214 | 7201690 ~ 7201927 (+) |
| G54779 | NA | non-coding | upstream | 67983 | 7156881 ~ 7157158 (+) |
| G54752 | NA | non-coding | upstream | 104362 | 7120495 ~ 7120779 (+) |
| G54957 | NA | non-coding | downstream | 364 | 7227451 ~ 7228576 (+) |
| G54964 | NA | non-coding | downstream | 10220 | 7237307 ~ 7237514 (+) |
| G54992 | NA | non-coding | downstream | 62509 | 7289596 ~ 7289853 (+) |
| G54999 | NA | non-coding | downstream | 68936 | 7296023 ~ 7296275 (+) |
| G55013 | NA | non-coding | downstream | 176988 | 7404075 ~ 7404335 (+) |
| G53651 | NA | other | upstream | 976749 | 6245564 ~ 6248392 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | upstream | 1292340 | 5931718 ~ 5943899 (+) |
| G53388 | NA | other | upstream | 1686087 | 5522242 ~ 5540638 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | other | upstream | 4016157 | 3202207 ~ 3208984 (+) |
| G51529 | NA | other | upstream | 4162554 | 3062033 ~ 3062587 (+) |
| G56100 | NA | other | downstream | 1902213 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 2626272 | 9853929 ~ 9856587 (+) |
| CI01000009_11761868_11765848 | ORMDL1.S, ORMDL1 | other | downstream | 4533699 | 11761606 ~ 11766944 (+) |
| G57811 | NA | other | downstream | 4706855 | 11933942 ~ 11935251 (+) |
| CI01000009_12432736_12435509 | NA | other | downstream | 5205471 | 12432538 ~ 12436017 (+) |
