LOC103036674 (col18a1,LOC108423906)



Basic Information


Item Value
gene id LOC103036674
gene name col18a1,LOC108423906
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 7676786 ~ 7742228 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU224490
gaacaagTGCTGTTCAGCAGCTGGGAGTCTCTGTTTGGTGATTCGGAGGGCAGGATGAAGAACAATGCCCCCATCTACTCGTTTGATGGCAGAGATATCCTCAGGGACAGTGCATGGCCAGAGAAGATGATCTGGCACGGCTCTAACGGTAAGGGTCACCGCCAGACAGATAACTACTGTGAGACATGGCGGACGTCGGATCACGCGGTGATGGGTCTGGCCTCGTCCCTGCAGGCCGGACAGCTTCTCCAGCAGATGCCCAGCAGCTGCTCTGGATCGTACATAGTGCTGTGTATCGAGAACAGCTACATCACACAATCAAAGAAGTAAACAGCCCATCTGTCACAGAGAGCGCTAGGCGACACTGCGTTCACTGTCCGTGTAGGACGTTTCATTTCctctccacaaaaaaaaaaaaaaaaaacgccctgcttcctaaatatgaaaatagaaaagacataataataattattataataaaagacAGGAGCTAGGTCTGCTTGGCAGAGAAGCTGCCCGTTGTCCTCTGGTTTCTTCTGTAATGCCAAAGAGACAGGCTGACCACGGTTGGCTGTGTCTCCGGGCATTggcacatattttttatttttttgcagttgaACCAGAGATGAGAGGCCAATAGAGAGAGGCTGCGTTTTTAATTGTatccatataaaaaaaagataaattgtatatgaaatgttgttcgttcacattgttttgttttgtttatttgtttttttttatgattttctgttcagtgtttctttatAAGATGTCTTAATTGGTATATTTAACCAGTTTTAGctacttttagtatttttatttttttgtgcaactttgttttgtttgttactTATTACAGTTCTTTTCATCCACGTTGGATCCAAGCTGTTGGACGTTCAGGGGCGGAGAAAGCCTAAAcatggaagaagaaaaaaaacaaaaaacttagaATTTACAAAGagactaaatatttattttgcagtAAAAATAACTACATTATGAATTTGAAAAAAGATTTAGGTCACATTTCTTGCTAGGCTATTTTAGTTAGCACTTTTTTGTTGCAGCGTATGgcttgtatatatacacagatgaAAGTGTGAAATTAAAATAGACTAAAATACACTACAACCACTCTGATGAGAACAAAAgaatattttgatatttagcCCCTAAAGGACTTTTGTACAAACCGATACGTTGAGTTGATACTGAGTTGATAGCATggctcagctgtgtgtgtgtgtgtgtgtgtgtgtatgggatCAAATGTGTGTGAAACGTGTCCGTCAGTGGGAAATTCATATGGACGTTTTTCTCTGTCATTATCTTCATGCTCATTCCAGATAGTTTTTCTACAGGATATTAAAGAGGATACAATtatgtaaaatcagaaaaaacacagatattTGATAAGTTTCTAAGTTTAATTCAGAAAACAGTTTGTTACAGTTTATTTCTGTTAATGAAAAATAGTAACCAGTTCTGAAACCCCGGTTATTCACGGCTGGGTAGAGGATAAGTTTAAGCTCAGTTTTGGTGCTGCTTTGTGTGAGAGTTAAGCTGGGGGGGTCAGAGGTGTACTTTTAGCGAGACACTTAATCTTAGACCTGTATTAAATGTTGCTGGCTCTGTGCTAGAGGTGATGATTCAGTACGACCCTGTGCGACTCACATCCTTCTTGTAACCTTTATGTGCTCCACCGTTTTTACAAGGCactgaataaatgatttttctccattcacaaaaaataatca
>XM_022680655.1
TTTTCCGCCCGCTTtgagagctgagtgtggggaCTCCGGGTGAGAGTGTGGGGATTACTGGCTGAGGCATGTCTGCTGCAGGACGTTGTATGAGCCACTGCTGAAAGATTGGAAGTGACCGTGATGTCTCGGCTCGGACTGTGGCTCGGCCTCGGCGCGCTCGTTAGCCTGTGCGTCGGCCACTCGCACGGATGGTTTTGGTTTGATGACACCAAGGACAAGAACAAGGACCAGGGCACGCCGACTTTCACCCCGACCTCTACCCCGACCCCGACCCAGGACTATGCCTCCATCGCCAGCACCACTGCGCCAACAGCAGTGCCAAGAACAGAGTACCTGAGGAGTGGAGTCACAGATGCTTCTGCAGTGGTGGAGGTCCCCTCTGAGGGTGAGGAGTTGGGGAGTGGAGGGGGTTCTGGAGCTGGCCATGAGGGTTCAGGTTCTGCTTGGGATGGTAGTAGAGTAGAGAAGGAGTTTAAAGCCAATTCTGTTTTAGAGTCAGTCCCTGAACCAGAGCCACAGTTTCATTCTGGGTCAAGAGCTGTAAATCAGTCCAGGTTTGCATTTGCAAGCATCTCTAGGTCCCTTCCTTTGGAAGATGAGCAAGTCTATGATATGCAGACCAATCTGGTGGAAGATAGACTAGAGACAAGTCAGAGCAAAGTGGATCTTTCCCAATTGAACAAGGGCATCCAGAGTAGAGGGAACACCACTAATTTTTCTAGGGATGAATCGAACTTTAGTGTGAATGTTTCTTTGGAAAGCATCAACGGTAGCTCTATAAATACGGTAGAAACTTCTAGCAATAGTTCTGGTTGGCATGCTGATCGCAATAACTCGACGCAGTATTCTCTGCCTGAATACTCTGTCTCAAACAACTTACTAACCGCAGGAAGTAACCCTTCTTTCCAAGCTAGCTCATCACCTGTCGTGGAATCCCCACGCTGCCTGCCCGTCGATTCCGACTTGCCCTTTTGCAGCAGGATGGGAGTGGAGAGTTTTGCGGTGCCCAACTTCCTCAACCAGACCAGCGTAGAGGAAGTGGAGGTGCTGTTGCGGGAGTGGGCGTGGCTTATTCGCTCAGGCTGCCACCACAGCACAGAGTGGTTCTTCTGCCTGCTGGTGGTACCCCATTGTGGCCCTCCTGGCCTGCCCCCGCAGCTGCCCTGCCGCAGCTTCTGCGAGCTCCTGATTGACAGCTGCTGGACGGCGCTGGGGGGTGGCGGACGCCTTCCTGTGGAGTGCAGCTCTCTCCCAGAGGAGAGCGACAACGGCTATCAGTGTCTGTCAGTTAGTACCCAGAAAGAAAATGTCGTGTCACTCCTGCAGCTGATCGGCGAGCCTCGACCCAGTGGCATCGTCAAGCTCGACACCCCCGGCTATGTTTTCGATTCGGATTCCAACGTGGGTCAGCTGGCGCGAGCGCACCTGCCGAACCCTTTCTACCGTGACTTCTCCCTGCTCTTCAACCTGATGCCCGTCAGCCTCAAAGCCGGCGTCATCTTCTCCATCACCGACTCCTCTCAGAAGATCATGTACGTGGGAGTGAAGCTGACGCAAGTGAAGGGGGATAAGCAGGACATCAAGCTCTTCTACACCGAGCCGGACTCTCAGACCTCCTACGAGGCGGCCAGCTTCAGCGTGCCCTCCATGTTCAACACCTGGACCCGCTTCTCCATCAGCGTGCAGGACGACCAGGTGtccctctttttaaactgcgaCACCGATCCCATGGTGGTCCGCTTTGAGCGTTCTCCAGACGAGATGGAGCTGGAATCAGGAGCTGGACTTTTCGTTGGACAGGCCGGAGGAGCCGATCCCGATAAGTTTCAGGGTATTATTGGAGATCTGAAGATTGTTGGAAACCCTAGAGCAGCGGAGCGGCACTGTGAAGAAGAGGAGGACGACTCTGATGCAGCCTCTGGTGATTATGGAAGCGGATATGAAGACGCTCGCACCGTCTCGACCACACCTGCCTCTCTCAGGCCTATTCCAGTGCCACCAGTTACCTACAATGATGTGAAAACTGTgaggaaagagacagagacagTATCAGGCTCATTTGATGCTTCTGGAAGAGTTTCTGGCTCATATGGTGATTCAAAAGGATTATCTGGCTTGTATGAGGATTCTCTACAAATATCTGGATCATCTGATGATTCTCATCGAGCGTCTGGATCACACGATGCTTCTCAACGAATATCTGGATCACGTGAAAGTTCTCGACAATCGTCTGCCTCTCAAGGTGGTTCTCAGCAACAGTATGGCAGTTCTGGTGGTTCTCGCCAAACGTCCGGCTCATCTGACAGCAGACGCACCTCCAGTTCCTCTGACAGCGGCAGACGAACTTCAGTTGTTTCTTCTGATTCAAGAAGAACTTCGAGCTCAGCTGCAGGTTCTGGGAAAGCGTCAGGCTCGTCTGAGAGCTCCCAGCGCACATCTAGCACGAGTAGTGATGCCCGAAGAGTCTCTGGTTCAATAGATGAAGGACGTTACACTGTGGGAATCAGACCTGGGGCTTCTGGCCCACAAGGTGCGACTGGAGCTCGTGGAGAGAAAGGAGACAAAGGAGACAAGGGAGACAAGGGAGACCGTGGACCTGAGGGTCCCAGGGGACCCAAGGGAGATTCAGGATCTGGAGCAGCATCTGGAGGCCCTAAAGGAGACAaaGGCAGCGCAGGAGAGAAAGGAATGAAGGGTGCAGCAGGCTTCGGCTATCCTGGATCAAAGGGTGACCAAGGACCTCCTGGTCCACCAGGCCCTCCCGGTCCTCCTGGACCTGGTGCTGAAGTGGTGGAGAGAGGGGATGGGTCTTTAGTGCAGCGGGTTGCAGGACCCAGGGGTCCACCAGGACCACAAGGACAACCGGGCCCAGCCGGCCCTGCTGGAGCGGACGGGGAGCCCGGTGACCCTGGCGAAGATGGAATTGCTGGGCCAGCTGGACCTCAAGGTTTCCCAGGAACCCCAGGAGACTCTGGAGCTAAAGGAGAAAAAGGTGATAGGGGTGAAGGCCAGCCAGGACCGAGGGGACCACCCGGGCCTCCAGGACCTCCAGGACCTTCATCTCGCGCAGACCGACCTACCTTTTTGGACATGGAGAGCTCTGGATTTGGTGATCTGGAGAGTATACGGGGATTGCCTGGCCTTCCAGGCCCACCTGGACCACCTGGACCTCCTGGACCTTCAGGCCCTGCCAACACAGCAGTGTCCGGTGCCGCTGGCGCCTTTGGGCCTCCTGGTCCACCTGGACAGAACGGAGCTCCTGGAAGtccaGGGGTTGCTGGACCACCGGGTGCTGACGGCAAACCAGGCCAGCCGGGCCCCAGAGGAGAGAAGGGGGATGCTGGTGAGCTCGGCCTACCTGGTGCAGTGGGAGAAAAGGGTGCTCAGGGACCTGCTGGTCCTCAAGGAAGACCAGGCCAGGGTGGACTTGCTGGCCTTCCTGGACCGATGGGACCTGTTGGACCCCCAGGACCTCCTGGGCCTCCAGGACCGAGCTTTCGTGTTGGCTTTgATGATATGGAGGGCTCTGGTGTTGGTGTTTTCCATAGCACACCTGGTGTCAGAGGACCAGAAGGAGTACAGGGTACCCCTGGAATTCCAGGTCTGCCGGGCAAACCTGGTCTACCTGGaataaaaggagagaaaggTGATGAGGGTCTTCAGGGAAGAGATGGACGCCCTGGCCTGGACGGATTTCCTGGACCACAGGGTCTGAAGGGTGAGCATGgtgacagaggagagagaGGAGAGCCAGGGCGGGATGGTAATGGTCTTCCAGGCCCACCTGGACCTCCAGGACCTCCAGGACAGGTCATCTATCGCCCTTCTGATGGTggtTTACCTGGACCCCCTGGTCAAGCGGGATTCCCAGGCCCAATGGGACCAAAGGGGGAGAGAGGTGACCCTGGACCTTCAGGCTATGGTTTCAAGGGAGAGAAAGGAGAACCTGGTGTGGTTATTGGACCTGATGGAAGCCCATTTTATCTTGGTGGATTGTCAGGACAAAAGGGTGAGCGAGGACCTGCTGGACCTGTGGGACCTACTGGGCCATATGGTCCTCCCGGTTTGAAGGGGGAGATTGGAATGCCAGGCAGGCCTGGTCGGCCAGGTGTGAACGGATACaaaggagagaaaggagagCCAAGCTCAGGCTCTGGATACGGCTACCCTGGTCCACCCGGCCCCCCAGGGCCCCCTGGTCCCCCGGGTCCTTCCACAGCTCTGGACAGATTTGGTAGATACGAAGATAACGGGAGGGTGTATCCAGCTATGAAAGGAGAGAAGGGAGACCGTGGAGCTCCTGGTGTCTCCGGACCAGCAgGCAACTATGACATTTACACGTTGAAGAATGAGCTGAAGGGTGAACGTGGAGAGTCAGGTCTGAAAGGGGAAAAAGGTGAACCTGGTGGTTATTATGATCCTCGTTTTGGAGCAGTGGGAGGACCAGCTGGACCTCCTGGAAGCCCTGGACTACCTGGTCCTAAAGGAGATTCTGTCAGAGGGCCTCCCGGTCCACAGGGCCCACCTGGGGCTCCTGGTATTGGCTATGAAGGACGCCAAGGAAACCCAGGGCCACCTGGACCTCCTGGACCACCTGGGTCACCCTCCTTACCTGGACCATACAGACCCCCAGTCAGCATTCCTGGTCCCCCTGGTCCTGCAGGTCCACCTGGCCCACCTGGCCCAAATTCTGGGGTGATGATTCTGAGGTCATATGACACACTGCTCGCAACAGCACCCAAACAACCAGAGGGCACACTCATCTACATCATAGAAAAGAGCGATCTCTATATCCGAGTGCGGGAAGGCATCAGACAAGTGATGCTTGGAGATTATAACCCCTTCAACAGAGATTTGGACAATGAAGTGGCTGCTGTGCAGCCGCCCCCGGTGGTCCACTACTCCCAAGACCACTCTGCCAATAACGGTGCAGAGCACTTCTCCCATGGTGGATCCGCCACCCAGCCCATTGAGCCCCCGGCCCGCCATCCAGCAGAGAGGCCTGAAACTCATCCAGCCCCTCCTGACACTCGCTATGACCCCCGCTACCCAGATCCCAGATACCCAGCCCAGCCTGACCCTCGCTACCCAGCCCAGCCTGACCCTCGCTACCCAGCCCAGCCTGACCCTCGCTACCCAGCCCAGCCCGACCCTCGCTACCCACCCCACACTGATCAGAGGTACGTCCAGCCGGACAGATACCCCATCACACCGGCCCGCAGACCCAGCCCACCCGTCGTCCAGCCTGAGGGCCACACGCACACATCAGGACCAGGGGTAAGATCACACTGCTACTGCCTTTTATTCACTGATTTTaacagtgtgaatgtagggaacattctagaacaagTGCTGTTCAGCAGCTGGGAGTCTCTGTTTGGTGATTCGGAGGGCAGGATGAAGAACAATGCCCCCATCTACTCGTTTGATGGCAGAGATATCCTCAGGGACAGTGCATGGCCAGAGAAGATGATCTGGCACGGCTCTAACGGTAAGGGTCACCGCCAGACAGATAACTACTGTGAGACATGGCGGACGTCGGATCACGCGGTGATGGGTCTGGCCTCGTCCCTGCAGGCCGGACAGCTTCTCCAGCAGATGCCCAGCAGCTGCTCTGGATCGTACATAGTGCTGTGTATCGAGAACAGCTACATCACACAATCAAAGAAGTAAACAGCCCATCTGTCACAGAGAGCGCTAGGCGACACTGCGTTCACTGTCCGTGTAGGACGTTTCATTTCctctccacaaaaaaaaaaaaaaaaaacgccctgcttcctaaatatgaaaatagaaaagacataataataattattataataaaagacAGGAGCTAGGTCTGCTTGGCAGAGAAGCTGCCCGTTGTCCTCTGGTTTCTTCTGTAATGCCAAAGAGACAGGCTGACCACGGTTGGCTGTGTCTCCGGGCATTggcacatattttttatttttttgcagttgaACCAGAGATGAGAGGCCAATAGAGAGAGGCTGCGTTTTTAATTGTatccatataaaaaaaagataaattgtatatgaaatgttgttcgttcacattgttttgttttgtttatttgtttttttttatgattttctgttcagtgtttctttatAAGATGTCTTAATTGGTATATTTAACCAGTTTTAGctacttttagtatttttatttttttgtgcaactttgttttgtttgttactTATTACAGTTCTTTTCATCCACGTTGGATCCAAGCTGTTGGACGTTCAGGGGCGGAGAAAGCCTAAAcatggaagaagaaaaaaaacaaaaaacttagaATTTACAAAGagactaaatatttattttgcagtAAAAATAACTACATTATGAATTTGAAAAAAGATTTAGGTCACATTTCTTGCTAGGCTATTTTAGTTAGCACTTTTTTGTTGCAGCGTATGgcttgtatatatacacagatgaAAGTGTGAAATTAAAATAGACTAAAATACACTACAACCACTCTGATGAGAACAAAAGTTGTGTGGATACAAATGGTGAGAAAAGAAAATAGTTGTGTGATTCCTggaatattttgatatttagcCCCTAAAGGACTTTTGTACAAACCGATACGTTGAGTTGATACTGAGTTGATAGCATggctcagctgtgtgtgtgtgtgtgtgtgtgtgtatgggatCAAATGTGTGTGAAACGTGTCCGTCAGTGGGAAATTCATATGGACGTTTTTCTCTGTCATTATCTTCATGCTCATTCCAGATAGTTTTTCTACAGGATATTAAAGAGGATACAATtatgtaaaatcagaaaaaacacagatattTGATAAGTTTCTAAGTTTAATTCAGAAAACAGTTTGTTACAGTTTATTTCTGTTAATGAAAAATAGTAACCAGTTCTGAAACCCCGGTTATTCACGGCTGGGTAGAGGATAAGTTTAAGCTCAGTTTTGGTGCTGCTTTGTGTGAGAGTTAAGCTGGGGGGGTCAGAGGTGTACTTTTAGCGAGACACTTAATCTTAGACCTGTATTAAATGTTGCTGGCTCTGTGCTAGAGGTGATGATTCAGTACGACCCTGTGCGACTCACATCCTTCTTGTAACCTTTATGTGCTCCACCGTTTTTACAAGGCactgaataaatgatttttctccattcacaaaaaataa

Function


symbol description
col18a1 Enables identical protein binding activity. Predicted to be involved in angiogenesis; endothelial cell morphogenesis; and extracellular matrix organization. Predicted to act upstream of or within positive regulation of cell migration; positive regulation of cell population proliferation; and positive regulation of endothelial cell apoptotic process. Located in extracellular exosome. Colocalizes with collagen-containing extracellular matrix. Implicated in primary angle-closure glaucoma.

NR:

description
PREDICTED: collagen alpha-1(XVIII) chain-like isoform X2

GO: NA

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

RNA


RNA id representative length rna type GC content exon number start site end site
TU224490 False 1760 lncRNA 0.39 3 7739495 7742228
XM_022680655.1 True 7152 mRNA 0.52 40 7676786 7742225

Neighbor


gene id symbol gene type direction distance location
LOC103040141 ctds1,ctdsp1,LOC108423903,LOC107714388,LOC107660585,LOC107602156,LOC107657521,LOC103359966 coding upstream 138706 7495151 ~ 7538080 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding upstream 186234 7487418 ~ 7490552 (+)
LOC103038369 fam126b coding upstream 300017 7303585 ~ 7376769 (+)
nr4a2 nr4a2 coding upstream 558272 7110158 ~ 7118514 (+)
LOC103041636 NA coding upstream 760529 6913112 ~ 6916257 (+)
LOC103036377 pcbp3,LOC108423908,LOC107728912,LOC107660579,LOC107657516,LOC102308458,LOC106920547,LOC108266078,LOC106581674 coding downstream 12635 7754863 ~ 7868505 (+)
LOC103036074 LOC103036074,LOC108423860,LOC107660577,LOC108266225,LOC107714364,LOC107728914,LOC107714365,LOC107602160,LOC107584166 coding downstream 167780 7910008 ~ 7917217 (+)
LOC103039823 LOC108423915 coding downstream 306867 8049095 ~ 8067885 (+)
LOC103033948 march4,LOC105020038 coding downstream 341131 8083359 ~ 8109692 (+)
LOC103039517 NA coding downstream 392830 8135058 ~ 8143255 (+)
G165687 NA non-coding upstream 82161 7594222 ~ 7594625 (+)
G165718 NA non-coding upstream 82602 7593647 ~ 7594184 (+)
G165688 NA non-coding upstream 141714 7494641 ~ 7535072 (+)
G165692 NA non-coding upstream 149109 7527191 ~ 7527677 (+)
G165656 NA non-coding upstream 428847 7247734 ~ 7247939 (+)
G165787 NA non-coding downstream 120769 7862997 ~ 7864489 (+)
G165809 NA non-coding downstream 220741 7962969 ~ 7963170 (+)
G165814 dal1b,LOC108423913 non-coding downstream 295657 8037885 ~ 8043080 (+)
G165856 NA non-coding downstream 371379 8113607 ~ 8113917 (+)
G165882 NA non-coding downstream 483135 8225363 ~ 8278604 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other upstream 191437 7385133 ~ 7485349 (+)
wdr4 wdr4 other upstream 1331383 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 1438800 6160400 ~ 6237986 (+)
G165406 NA other upstream 1530817 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 1553735 6117364 ~ 6123051 (+)
LOC111194887 NA other downstream 287167 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 1238334 8980562 ~ 9067879 (+)
G166015 NA other downstream 1296014 9038242 ~ 9085850 (+)
LOC103024790 LOC103024790 other downstream 1394391 9136619 ~ 9148577 (+)
G166177 adarb1,adarb1b,LOC108266805,LOC105907970 other downstream 2085715 9827943 ~ 9837292 (+)

Expression



Co-expression Network