LOC103024790 (LOC103024790)


Basic Information

Item Value
gene id LOC103024790
gene name LOC103024790
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 9136619 ~ 9148577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU224855
ACCGCTTTCCCACCAAGTGCCTCTTGCAGTGCCACGGCATTTCACATTTCTTACGCACCGCAGCTTATGAGGAGAGTAGGAGCTTCACCTCAAAGTCTTCAACAGGTGGTATATCTATataaagggaaagaaagaggatTCTCAAGCTCAAGggTTGGATGGAGCCAAGTATTCTCCCTGTGACCGGCTTACGTTTGACAACGAGGTCTACAACCACTGCATACCGCTGTACAGGCAAAGAATGGCAACCAGCAACTACCAGCTGGAATGCCCTTGGCCCAACACTAAAGGGTATTATGTCCAACTGGACGACTGCGTGAAGAAAGCGATAACCCGCTCCTTCTGCGGAGAACCCTCTCTGAAGAACGATATCTTCCTGAAGCTCCATCAAACCTATTTCCCCCTCTGCTTCTTCATGCAGGACCCAGGCTTGCACGTCCTGCTGCTGCTCACGCTGCCCTGCATCATCATCACCTTCCTCATGCCCTTCTTCTGCGTGTGCCTCAAAGACTTCTGACTGTACCTCAGTTACTTCTGGACAAACCGAGTCGACAGGAAACCCACCCTGTTCTGGATTGGAAGATCTTTGGGGCtgtggagagaaaaacacctgGACAACTTATCAACTTCTCAGCGTTTCACCGAATGCattaaaatggacaaaaaaacaccaaacaatCTGTGAACTATGGGTTTTAGTTAGCTAGACTGTGGGCTGTCTTTGCAGTTAGAGCCTGTGCTGCCTTATGTGTTTGCCGTTTCTGAATAGAAGCACATTTTGAACCTTTGTGTGACTGAACTGTTCTGGAAAGGTAAACACAGTCATATTGAAAATTCAGGTCAGTCTAATTAGACCCTTCGAGGTCCCATTGCCGAACTCATCACACCGTATTTGTTTTTCACTGCATTAAAGAGTCCAagttttatatttgttatattagGAGTACTACTGAAATCTGTGACTGCTCTTCATTA
>XM_007256371.3
GCTGTTGAAGCCACTTATCCGTAGACGCTTCTCTGTAGTTGAGGAGCCAGGgattctcttcttttcttggtAGAATTTCTTTTCTCGTTTGTATATCTTGCTTGTATATCTTTTGCaatgtttctctcagtgttggCTTATGAAAATAGTAAAAGGCTAGAGGTCCACATTGTCCTATTCAGCTGGGAATAACTAGAGGCTAGAACATGCCTGGAAAAGAAGGAGATCGCCACAAAGGGACATGGGAAAGGAAGCAGACGTCCAGGGGCTCAGAGCTGGTAATTGCGAAAGCGAGTTCCCAGTCCCATTGATAACAGAAGGGACTGCCAGAGGGCTTCAGCGACCGCTTTCCCACCAAGTGCCTCTTGCAGTGCCACGGCATTTCACATTTCTTACGCACCGCAGCTTATGAGGAGAGTAGGAGCTTCACCTCAAAGTCTTCAACAGGTGGTATATCTATataaagggaaagaaagaggatTCTCAAGCTCAAGAAGCGTGGAGAGATGGAGGGCAGCGTGACCTCAGTGATTTCTACCACTTTAATCATGTGCCTAGCATTTACAGggTTGGATGGAGCCAAGTATTCTCCCTGTGACCGGCTTACGTTTGACAACGAGGTCTACAACCACTGCATACCGCTGTACAGGCAAAGAATGGCAACCAGCAACTACCAGCTGGAATGCCCTTGGCCCAACACTAAAGGGTATTATGTCCAACTGGACGACTGCGTGAAGAAAGCGATAACCCGCTCCTTCTGCGGAGAACCCTCTCTGAAGAACGATATCTTCCTGAAGCTCCATCAAACCTATTTCCCCCTCTGCTTCTTCATGCAGGACCCAGGCTTGCACGTCCTGCTGCTGCTCACGCTGCCCTGCATCATCATCACCTTCCTCATGCCCTTCTTCTGCGTGTGCCTCAAAGACTTCTGACTGTACCTCAGTTACTTCTGGACAAACCGAGTCGACAGGAAACCCACCCTGTTCTGGATTGGAAGATCTTTGGGGCtgtggagagaaaaacacctgGACAACTTATCAACTTCTCAGCGTTTCACCGAATGCattaaaatggacaaaaaaacaccaaacaatCTGTGAACTATGGGTTTTAGTTAGCTAGACTGTGGGCTGTCTTTGCAGTTAGAGCCTGTGCTGCCTTATGTGTTTGCCGTTTCTGAATAGAAGCACATTTTGAACCTTTGTGTGACTGAACTGTTCTGGAAAGGTAAACACAGTCATATTGAAAATTCAGGTCAGTCTAATTAGACCCTTCGAGGTCCCATTGCCGAACTCATCACACCGTATTTGTTTTTCACTGCATTAAAGAGTCCAagttttatatttgttatattagGAGTACTACTGAAATCTGTGACTGCTCTTCATTAAAAATCTGGCAACCTGTA

Function

NR:

description
receptor activity-modifying protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224855 False 975 TUCP 0.46 3 9136961 9148559
XM_007256371.3 True 1408 mRNA 0.46 4 9136619 9148577

Neighbor

gene id symbol gene type direction distance location
LOC103023018 tns1 coding upstream 478862 8298725 ~ 8657757 (+)
LOC103039517 NA coding upstream 993364 8135058 ~ 8143255 (+)
LOC103033948 march4,LOC105020038 coding upstream 1026927 8083359 ~ 8109692 (+)
LOC103039823 LOC108423915 coding upstream 1068734 8049095 ~ 8067885 (+)
LOC103036074 LOC103036074,LOC108423860,LOC107660577,LOC108266225,LOC107714364,LOC107728914,LOC107714365,LOC107602160,LOC107584166 coding upstream 1219402 7910008 ~ 7917217 (+)
LOC103025110 cx43.4,LOC108423927,LOC107741582,LOC107704825 coding downstream 174759 9323336 ~ 9331783 (+)
lct NA coding downstream 185699 9334276 ~ 9366222 (+)
hdac4 hdac4,LOC107601379,LOC107741589 coding downstream 274486 9423063 ~ 9661794 (+)
LOC103027237 LOC108423930 coding downstream 622039 9770616 ~ 9776408 (+)
LOC103028506 NA coding downstream 1120469 10269046 ~ 10280259 (+)
G166003 NA non-coding upstream 333174 8803183 ~ 8803445 (+)
G165958 NA non-coding upstream 660106 8475634 ~ 8476513 (+)
G165942 NA non-coding upstream 699267 8340549 ~ 8437352 (+)
G165953 NA non-coding upstream 715743 8419783 ~ 8420876 (+)
G165885 NA non-coding upstream 894331 8240906 ~ 8242288 (+)
G166073 NA non-coding downstream 136151 9284728 ~ 9285052 (+)
G166077 NA non-coding downstream 139395 9287972 ~ 9288253 (+)
G166078 NA non-coding downstream 139832 9288409 ~ 9288670 (+)
G166086 NA non-coding downstream 200782 9349359 ~ 9350193 (+)
G166088 NA non-coding downstream 219099 9367676 ~ 9370095 (+)
G166015 NA other upstream 50769 9038242 ~ 9085850 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other upstream 68740 8980562 ~ 9067879 (+)
LOC111194887 NA other upstream 1102035 8029395 ~ 8034584 (+)
LOC103036674 col18a1,LOC108423906 other upstream 1394391 7676786 ~ 7742228 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other upstream 1651270 7385133 ~ 7485349 (+)
G166177 adarb1,adarb1b,LOC108266805,LOC105907970 other downstream 679366 9827943 ~ 9837292 (+)
G166294 NA other downstream 1278689 10427266 ~ 10429912 (+)
heg1 heg1,LOC107555935,LOC107741920,LOC107714104 other downstream 1472110 10620687 ~ 10636811 (+)
tas2r1 NA other downstream 1525654 10674231 ~ 10679019 (+)
LOC111194895 LOC108423979,LOC108267042 other downstream 2089190 11237767 ~ 11242057 (+)

Expression


Co-expression Network