G55178


Basic Information

Item Value
gene id G55178
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7269778 ~ 7270718 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62754
GTTTCAGTGTGGGCCCTTTAAATGCAAATGAGCTGCTGCACTCGGCCTAAGAGGGCGGAGCTTCACGAGCTGATTCTCCAGTGACAGGATTCAGTCAGGACGCACTATAATGTCAGGAACTGTGAATATATGCTGCATGGAGATAGAACAGGTATAGTTTAGTTCAATTACGGTTATAACTTATATTGTCTTCTTGTTTTTATCCACTATATTAGTACAAGCCAGTTTACCGATGAGTTTTATAACGTTTATTGTACTTCACGCAAAATATGAAGCGTCCGTTTTCACTCTAGAAAATCACTGTAAGAGCTTAATAAAACACAGTGTAAGTGTGCATTAAAATATTATCCATAAACTCTCTCTCTCCCTTGCATTATCATCAACATACATAGCAAAGTACACAGAAACACTCGTTACAACTAACAGTAAACAAATATATAAAGATCTTATGCCTTTTCAGGTGTTGCTTAATAAACTGGTAAACTTTATATCCGTAAATCAACTCCAATGAACTGTAATAAAGTGCTCTCACCTTCATTACTGCCATTTCCAGTATCACTCTGGAGACTGTAAGCTGGATCACGAACAGTTTGTAGTTATATATCCTTGAGTAGCACATTTTTAGCACAGTCTTTGTTTTGTATTGTCCCTTTGTATTGATATTCGTTCACAAAGCAGACCGGTGTGAAATGATTTGCGCAGACATAAACGAATTAGGTAGAGTTGAGGGAGCATTTTCTTCAAAAACAAAATGAATCCACCTCGTCTTCAGCGGCTCAGATTCAGGGAGTAAATGGAGAGAGCTATGTGGATTAATCCATCCAGCTACAGAACACCTAAAAAGCTTGGTCAGTGCAGCAATGGCGGACTGTGTACAACTGGCTGTGAACTCGCTCAGGGCGGTTCTATGTTAAAATGGCAGTGTCTGTCAACATTCGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62754 True 941 lncRNA 0.39 1 7269778 7270718

Neighbor

gene id symbol gene type direction distance location
CI01000009_07224625_07229839 NA coding downstream 39127 7224316 ~ 7230651 (-)
CI01000009_07064060_07084764 ZEB2A coding downstream 184560 7063797 ~ 7085218 (-)
CI01000009_07020336_07047155 NA coding downstream 221601 7020315 ~ 7048177 (-)
CI01000009_06913437_06917631 NA coding downstream 352147 6912470 ~ 6917631 (-)
CI01000009_06891877_06908223 EFNB2A, EFNB2 coding downstream 361555 6891241 ~ 6908223 (-)
CI01000009_07383927_07391805 ITM2B coding upstream 112936 7383654 ~ 7391994 (-)
CI01000009_07500752_07541007 LRCH1 coding upstream 229884 7500602 ~ 7541007 (-)
CI01000009_07625693_07637462 SLC39A10 coding upstream 354836 7625554 ~ 7637462 (-)
CI01000009_07953250_07953748 NA coding upstream 682000 7952718 ~ 7954139 (-)
CI01000009_08050911_08053397 NA coding upstream 779703 8050421 ~ 8053500 (-)
G55171 NA non-coding downstream 10064 7259486 ~ 7259714 (-)
G55156 NA non-coding downstream 38416 7231109 ~ 7231362 (-)
G55151 NA non-coding downstream 47255 7222308 ~ 7222523 (-)
G55143 NA non-coding downstream 57483 7211932 ~ 7212295 (-)
G55214 NA non-coding upstream 126209 7396927 ~ 7397126 (-)
G55215 NA non-coding upstream 126492 7397210 ~ 7397409 (-)
G55218 NA non-coding upstream 152649 7423367 ~ 7423595 (-)
G55219 NA non-coding upstream 166937 7437655 ~ 7437983 (-)
G55238 NA non-coding upstream 216350 7487068 ~ 7487290 (-)
G53515 NA other downstream 1764530 5502395 ~ 5505248 (-)
G52828 NA other downstream 3038309 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 4007821 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 4370371 2883688 ~ 2893975 (-)
G52410 NA other downstream 4707245 2551724 ~ 2562533 (-)
G55814 NA other upstream 1155103 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 1587434 8856310 ~ 8860563 (-)
G59097 NA other upstream 5017499 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 6704670 13975099 ~ 13978614 (-)
G59490 NA other upstream 6762846 14033564 ~ 14037873 (-)

Expression


Co-expression Network