G55058


Basic Information

Item Value
gene id G55058
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7561549 ~ 7561817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62633
TCTATCTAAATCTATCTATCTAAATCTATCTATCTATATCTTTCTATCTATATCTGTTTCTGTCTATCTATCTATCTATCTATCTATCTCATAGCAACCACCCAGAACAACCTAGCAACCGCATAGCAGCCAACCAGAACACCATGGCAACCACACAAATCAATCTGGCAACATCCTAGTAACTAGCCCGAGTACCTTAGCAACCACATAGGACCACCCTGGCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62633 True 225 lncRNA 0.40 2 7561549 7561817

Neighbor

gene id symbol gene type direction distance location
CI01000009_07545007_07550103 NA coding upstream 10820 7545007 ~ 7550729 (+)
CI01000009_07543034_07544161 NA coding upstream 17388 7543034 ~ 7544161 (+)
CI01000009_07490344_07493862 ESTD, ESD coding upstream 67687 7490248 ~ 7493862 (+)
CI01000009_07440170_07459782 HTR2A, HTR2AA coding upstream 101140 7440039 ~ 7460409 (+)
CI01000009_07392574_07395739 MED4.S, MED4 coding upstream 165779 7392481 ~ 7395770 (+)
CI01000009_07969738_07973990 NA coding downstream 407327 7969144 ~ 7974033 (+)
CI01000009_07982462_07999759 NA coding downstream 420433 7982250 ~ 8000306 (+)
CI01000009_08002011_08021062 TMEFF2 coding downstream 439959 8001776 ~ 8021113 (+)
CI01000009_08027345_08040961 NA coding downstream 464109 8025926 ~ 8040984 (+)
CI01000009_08045921_08048630 NABP1A coding downstream 483702 8045519 ~ 8049154 (+)
G55057 NA non-coding upstream 9428 7551872 ~ 7552121 (+)
G55032 NA non-coding upstream 74519 7486813 ~ 7487030 (+)
G55030 NA non-coding upstream 77046 7484218 ~ 7484503 (+)
G55009 NA non-coding upstream 97091 7464128 ~ 7464458 (+)
G55013 NA non-coding upstream 157214 7404075 ~ 7404335 (+)
G55091 NA non-coding downstream 91102 7652919 ~ 7653350 (+)
G55328 NA non-coding downstream 162759 7724576 ~ 7724812 (+)
G55385 NA non-coding downstream 202376 7764193 ~ 7764434 (+)
G55395 NA non-coding downstream 213632 7775449 ~ 7775651 (+)
G55415 NA non-coding downstream 231511 7793328 ~ 7793616 (+)
G53651 NA other upstream 1313157 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 1628748 5931718 ~ 5943899 (+)
G53388 NA other upstream 2022495 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4352565 3202207 ~ 3208984 (+)
G51529 NA other upstream 4498962 3062033 ~ 3062587 (+)
G56100 NA other downstream 1567483 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 2291542 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 4198969 11761606 ~ 11766944 (+)
G57811 NA other downstream 4372125 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 4870741 12432538 ~ 12436017 (+)

Expression


Co-expression Network