G170109


Basic Information

Item Value
gene id G170109
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25741386 ~ 25744194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230318
CTCTTCAGTTGGTTATCAAATTGCAATAGCTGCACACAGATGTGTCCAGGTGAGGTCACGTGGGTGACTCTCACTCTCAGGTCCTTAAGGCAGGCTGGCAGATTCAAGGTTACTTGCAGCTCTGGAGGCTCAACAGTAGGAGGTGGAGGTGGCGGCAGCGGCTCATCTGGAGATTTATGCTCCTCACTGAGTGGGGGATCCCACACAGCAGTATCCGGGAGGGGAGTTTCCTTCAGCTGGACTTGTTTGGTGACCAAAGATGCAAGTCCTCTTTTAACCAGTATTTCTCCAATGCTGACTGCAGGCTCAGTGAAACACTTGCTGACCTCATAAAGACGAACAGGCAACACTTTGGAATGGGGCACAAGCTTTGATACCACTAGAGTGACCAAATTCTGTTCCGTCATTTTTCGGAACACTTCAATGCTTTCTTCACTCCAAGAGTCTCCCACACTCGTGACATCTACCAGAGAACACCACAATGcCATGGCAGGTAATGCAAAGAACTCATCCTTTATCTGTCGAAGGTCATTAATAGACACAGTTTTTTTGTTGCCAAAATCGACGTACTGGACCTCCACCATCCGTCCACCAGGAAAACCTGTAACTTCAGCCCTGCACCAGTCCTTGTTTTTTTCGCAGAGGGCAACGCAGGCCTGACCCAAACAAGGGCAATAAATCTGCAACTCAGTCGCGCTCCCTGGAGGCCCATAACAGTCCTGCAGTTTAGAATTCAGCAGCAAGAACTCCATACTGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230318 True 760 lncRNA 0.49 5 25741386 25744194

Neighbor

gene id symbol gene type direction distance location
cenpj NA coding upstream 9570 25722722 ~ 25731816 (+)
LOC103032105 NA coding upstream 57428 25668305 ~ 25683958 (+)
efnb2 efnb2,LOC107563180,LOC107555860 coding upstream 1381045 24330978 ~ 24360341 (+)
LOC103031830 zeb2a,LOC108438030,LOC107711399,LOC107675348,LOC105901027 coding upstream 1754380 23910262 ~ 23987006 (+)
LOC103034031 calcrla,calcrl,LOC108411304,LOC107657513,LOC103374150 coding upstream 2690101 23016299 ~ 23051285 (+)
LOC103033805 NA coding downstream 16640 25760834 ~ 25773739 (+)
dnajc3 dnajc3,dnajc3a,LOC107663878 coding downstream 40351 25784545 ~ 25794814 (+)
LOC103029991 LOC108430469 coding downstream 163252 25907446 ~ 26008600 (+)
LOC103034973 pth2r,LOC107733633,LOC107663806 coding downstream 347654 26091848 ~ 26195531 (+)
tmem177 tmem177 coding downstream 510342 26254536 ~ 26258780 (+)
G170106 rnf17 non-coding upstream 2504 25735304 ~ 25738882 (+)
G170104 NA non-coding upstream 6762 25733856 ~ 25734624 (+)
G170100 NA non-coding upstream 19512 25721664 ~ 25721874 (+)
G170061 NA non-coding upstream 240647 25500062 ~ 25500739 (+)
G170060 NA non-coding upstream 245644 25495489 ~ 25495742 (+)
G170118 NA non-coding downstream 52514 25796708 ~ 25797471 (+)
G170195 NA non-coding downstream 303579 26047773 ~ 26048017 (+)
G170197 NA non-coding downstream 328520 26072714 ~ 26073055 (+)
G170202 NA non-coding downstream 392557 26136751 ~ 26137152 (+)
G170204 NA non-coding downstream 413948 26158142 ~ 26158344 (+)
G170046 LOC108412134 other upstream 273622 25467340 ~ 25467764 (+)
LOC103029609 arglu1,arglu1b,arglu1a,LOC108440456,LOC107555859 other upstream 1416845 24309236 ~ 24324541 (+)
gtdc1 gtdc1,LOC107711393,LOC107711392 other upstream 1651673 23991935 ~ 24089713 (+)
LOC103043377 col5a2a,col5a2,LOC107699008,LOC107657512,LOC107717009,LOC107562716,LOC108435067,LOC108266478 other upstream 2863021 22808295 ~ 22878365 (+)
G169511 fkbp7 other upstream 2965869 22771553 ~ 22775517 (+)
LOC103031158 trim13 other downstream 2095468 27839662 ~ 27856973 (+)
LOC103038469 si:ch73-390b10.2,LOC107688773,LOC108266990,LOC108431484,LOC107389858 other downstream 2561933 28306127 ~ 28319147 (+)
sec22a sec22a,LOC107722877,LOC107660641 other downstream 4007374 29751568 ~ 29836896 (+)
G171074 NA other downstream 5224338 30968532 ~ 30969094 (+)
p2ry8 p2ry8 other downstream 6232519 31976713 ~ 31982711 (+)

Expression


Co-expression Network