tbr1 (tbr1,LOC106511624)


Basic Information

Item Value
gene id tbr1
gene name tbr1,LOC106511624
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 660601 ~ 666804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230408.3
AAGCATCTAGCTCAAATCTCGCGCGCGCACGCGCGTCTTAATTGCAATtgcagtttgtgtgtgtccctgtgtgtgtgtgcgtgcgtgcgttgtttaaaatctttctttttattatttatttaactcttaCGTTCCTCGAGCCATGCAGCTCGAGCAGTGCGTCTCGCCGGCGCTCGCGCTCTCCGACAAGTGCGCGCACGTGGGCAGCGGCGGACGCGCGAGCTCGCGAGGGTCCGATCTCGCGCATGCCATGATTACGCGCGCCGTCGACGGCGGCGACCTGGAGAGAAGGAGTTCACCTGTGAAAAAAAACTGCGGCGGGATGACGAATGAGTCCGAGGCGGACGCCTTCGCGGACTCTAAGGGCCCGGCGGGGGCCGCCCAGAGCGCCAAACTCTCTCCTGCCCTCGACGGCACGCCCGACATTCGCCACACCTTCGATGGCTGCGCGGCAGATCGCTGCCTCGCGCCTCCTCCGTCCAGCCACGCTCCACCACCGCCGCCACCACCACCGCCGCCGCCGCTCTCCGCGAGCCCCACGCCCATGTTCCCCTACGCCAGCCAGCACGGCGCGGCGCACGCCGCCTTCTCCATCGCCAGCCCGAGCCGCTACATGGCGCACCACCCGGTGATCGCCAACGGCGCCTACAACGGCCTGCTGAGCGGCGCGTCCCCGCAGGGCTATGCGGGCGCGGGCTACCCGTACGCCCAGCAGTACGGCCATGCGTACCAGGGCGCGCACTTCTACCAGTTCCCCTCGGCTCAGGCCGGCCTGGTACCGGGCAAGGCGCAGGTGTACCTGTGCAACCGCGCGCTCTGGCTCAAGTTTCACCGACACCAGACCGAGATGATCATCACCAAGCAGGGCCGGCGCATGTTTCCTTTTTTAAGCTTCAACATATCAGGGCTGGACCCAACTGCCCACTACAATATTTTTGTGGATGTGATTCTGGCTGACCCCAACCATTGGCGATTTCAGGGGGGCAAATGGGTCCCGTGCGGCAAAGCGGACACCAACGTCACAgGGAACAGAGTGTACATGCACCCAGACTCGCCCAACACTGGAGCGCACTGGATGCGGCAAGAGATTTCTTTCGGCAAACTAAAACTGACCAATAACAAGGGAGCAACCAACAACACAGGCCAGATGGTGGTGCTGCAGTCTCTGCATAAATACCAGCCCAGGCTGCACGTGGTGCAGGTGAATGAAGACGGAACCGAGGATACGAGCCAGCCGGGTCGCGTGCAAACCTTCACCTTCCCTGAGACCCAGTTCATCGCGGTCACAGCCTACCAGAACACAGACATCACACAGCTGAAAATAGACCACAATCCATTTGCAAAAGGATTTCGGGACAATTATGACACTGTCTACACAGGTTGCGACATCGACCGGTTGACGCCGTCCCCGGGCGCGTCCCCGCGCTCTCAGCTCATGCCCGGCGCCAGATACGCGATGACTGGCTCCTTCCTGCAGGAGCAGTTCGTGGGCTCGTACGCGGCGGCCAAGTCGCGCTTCCACGCGGGCGCGGGCGGCGCTGCTGGCGCGGATCGCGGCGTGCCACTCGCCAACAGCCTGCTGTCGCCGCAGCCAAGCGACGAGGCCGCGGTGGGCTCCCCGCAGCGCTGGTTCGTCGCCCCGGCCAACAACCACCGCCTGGACTTCGCCGCCGCCTCGGCGTACGACGCCGcggccgccgccgccgccgctgatCTGGCCGGCAACGCGGCCACGCTGCTGTCGTACGCGGCCGCCGGGGTCAAGCCGCTCCCGCTGGGCGCCGCGGCGGGCTGCTCCAACCGTGCGCTCGGCTACTACGGCGAGGCGCCGGCGTGGGGCGCGCGTACACCGCCCCAGTACTGCGGCGGCGGCACCACCACCATGGGCGCCACGTCCGTGGGCTCCACCGCGGGCACCACCACCAAGCCAGGCTCCGTGCTGTCCTGCTGGGGCAGAGCAGGCGCCTCCGGATACCTGCTCGGGCCTGATGACAGCGACGGCGCGGCGGCCCCCGACAGGTCCCCGCTGGGCGCCACGGACGAGGGCAGCAAGGCCAAGGAGCTGTCCGAGGCCGCGTGGATTGAACCACCCTCCTCCATCAAGTCCATCGACTCAAGCGACTCGGGCATCTTCGAGCAGGCCAAGCGACGGAGGATGTCCCCTTCGGCCACGCCGCTCTCCGAAACGTCGTCGCCGTTAAAGGCCGAGATCCTGGCGCCCAGGGAGTGCGAGAAGACTTGCCCCAAGGACATGGGTTACTACAGCTTCTACACCCACACTTAGGAGTCCTCGCGCACGACAGTCCAATGAACCCCATCAATATTGATCTATCTACTGATATTTGACCTAGGCTCTTTATTTGTTCTATTTATTTACGTCTCTACCATTTATAAAGCTAGTTTTATCAACATGTCCTCTTATTGTTCCCTATAGAAAGCTCTTTGCTCTTTTTAAATCGTTattaaaggtttataaaaaaataagaccttGTTGGCGAATAAGGGGGGATGAcgatataacaaaaatattgtacatACCTATCTAGACATCTCATTACCTGTTGTTGTACAGCAtgaaaaagaacagaaagtCTAGAATCGTTGTGCTTTTAGACAAGGTTGGTGAGGCCCAGCGTGGTTCTATCCCACAAAGACTGTTCTGAGGCCCAGACCACCAAACTTTGGGTAGTGAGTGGAGTAGAGACCAAACGGACCATTGCTCAGTATTGCTGTTGCTCTGTAGCCTCGCCGTGTCTCTTTGGGAAATCTATTAGTCTGTAGTTTCATTGTTGCTCTTAACGTATATCATTTCGTAGCCTGTATTTGTTGTAACGCTGTTGGTAGGCCAAACATTCatcaggaaaaaaatgaaactgaTGAAATTAAAAGCCTTGAAGTCCAAAGGCCAGAGGTGAATGATCTGTACAGGGCAGGCATCGTTTTCCTTCCTCCATCCTTCCACCGTGTGACCACCAATGACGTTTTTTGTGATTTAATGGGCGTTTCGTTACATATTCCAGCATCACGTCCATTGAGCCTGCTTAAAAGCTGATGTAATTGTGATGTGCTTCTTTGCAATAAATATAACGAGAGTATGAACCTCTTGACAAAACAACCTGCACGAGA

Function

symbol description
tbr1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleus. Implicated in autistic disorder.

NR:

description
PREDICTED: T-box brain protein 1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K10174 TBR1; T-box brain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230408.3 True 3126 mRNA 0.58 6 660601 666804

Neighbor

gene id symbol gene type direction distance location
tank NA coding upstream 33975 613090 ~ 626626 (+)
tanc1 tanc1,LOC108266469 coding upstream 293753 184448 ~ 366848 (+)
cers6 cers6,LOC107564136,LOC107677898 coding upstream 503547 105214 ~ 157054 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding downstream 8256 675060 ~ 750486 (+)
LOC103030276 LOC103030276 coding downstream 1052488 1719292 ~ 1724952 (+)
LOC103029311 NA coding downstream 1108647 1775451 ~ 1783041 (+)
LOC103028997 NA coding downstream 1117074 1783878 ~ 1796747 (+)
ehhadh NA coding downstream 1139591 1806395 ~ 1822220 (+)
G164123 rbms1,LOC108266580,LOC105908026 non-coding upstream 140429 507845 ~ 520172 (+)
G164118 NA non-coding upstream 173862 485934 ~ 486739 (+)
G164194 NA non-coding downstream 35477 702281 ~ 716718 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding downstream 173077 839881 ~ 845477 (+)
G164276 NA non-coding downstream 277793 944597 ~ 944874 (+)
G164282 NA non-coding downstream 285261 952065 ~ 952429 (+)
G164284 NA non-coding downstream 322493 989297 ~ 989513 (+)
G164126 NA other upstream 88408 538279 ~ 572193 (+)
nostrin nostrin other upstream 485676 131108 ~ 174925 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other downstream 737297 1404101 ~ 1496380 (+)
tspear tspear other downstream 1077602 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 1135983 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 1823240 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 4601235 5268039 ~ 5298728 (+)

Expression


Co-expression Network