LOC103030276 (LOC103030276)


Basic Information

Item Value
gene id LOC103030276
gene name LOC103030276
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1719292 ~ 1724952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233774.3
CTAGGGACTGCAGGGAGCTGGAGTTTTGCGGATCTGCGTGGAGTTATTTTAGCGTTAAACACAGAGTTCCGTGGGTTTTGAGTTTGTGGTGAAGTGGGTCGGTCTGAGGTTCGGTTCTGCTTTCTGTTCAGCGCTGTTTTTTAATATGAAACTCCGGgagtttgtgtgtttctgtctccTGCTGATCGCTTTTCTCTGGGCGGAGGGTTTCGCTCAAACTACAGCAAGCAGCTGCGCTGCAAAATCCAACACAACCTGTGAGGAATGCCTCTCCAATGTTTCTtgtttgtggTGCAATACCGATCAGAGGTGTGTAGACTACCCGGTGCAGTCGGTCCTGCCCCCGGCGAGTGTGTGTCGTCTGGCTGAGGCTCGTTGGGGGAAGTGTTGGGTGAACTTCCAGACTCTGATCATCACTCTGTCTGTGCTGGCACTGGTGATCCTCATCGCTGTGGTGGTCTGCTGCTTGTGCTGCTGCAAGTGTGAAAACATTGGGAGATCCAGAAAAGTGGATGAAAGAGAGGCGAGACAAGCTGATCTAAGAAGAGTTCGGAACGAGGAGAGGAGAGAACAGATGAAAAGCAGACATGACGAAATCCGCAAGAAATACGgtCTGATGAAGGATAATTCTTACAGCAGATTTGAGAACAGCTAAGGAGCTTCATCTGTCCAGACCACCTGTTCTTCTCCAAAACCCCTCCCAAAACTCACACTCCTCCAGAATCTGATGTCCTGCACTGATTTTCTTTTTGTACATAGTTTAATGTGAACTGattgttctgtgtgtgtcttAGTTCTTTCTGCTGCTGTACCAAAGGCTGCGTTCACACTGCAGGTAAAAGTGGTAAAAagggcccaaatctgattttctcacCAAATCCGATGTTTATTTTAGGATGTTCAAACTATCTTTTAATCTAATCTTTATATGAAGAGCTTCGcataaagtttcagtttcatttttccAGCCCCACAGAAGGTATTAAGCAGTTCCAGTGTCTCACAGCTGGGCGAATCACTGAAAATGCATTTCAGCTGGCTGTAAAAAGGTCACGTTAGCAGGCCACGCCCACTTTATTGGAGTCTTTAGTTTCTTTAAGCTTTGCTTTtcccttaactgttttttttttttttgacactgCAGCAGTGCCCTCCTTTGGCTGCATTCAGCCATTACATTAGAAACACAGAAACTTTGCACCACAAGActtctaatttagtttaaacagaTATTTTAAGATACTTTTCAAAtatttctgagtttttttttcactcttccACCACTGAAACCCTCCCTCACTGCTGTCGTCCATTTCCTCATTTTCACTGGCTTTTTTAGTCtccttgatgtaaaagttgcatAACTTCCGATCTGACTGTATTGGATTTTAATGCTCGAATTAGAACTGAAAATTTaagattcagtgtgttttcgtAATTTGCACTGCCACACAGATAACACACCTGTATCACATATATCTGAAAAGAccagatttgggccacttttacctgctgagTGAAGGTAGCACAAGAGTTTTATCTGATCTGCACTCTGAGCCTCAACAACACTGTAGACCCCCAAGCATCTCCCCCACATATAATCTATGTTGCATCCCCTGATTATCACTCATGTCCTGTTTTTAGTGCTTCATTATAAATTCAGTATGTTTTTGAATATAAGCCAAAATGAATGCTGTAAAAATACACAGTATTGTTCCAAATACATTTCTGTAAAAGAA

Function

NR:

description
pituitary tumor-transforming gene 1 protein-interacting protein-like

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233774.3 True 1739 mRNA 0.43 7 1719292 1724952

Neighbor

gene id symbol gene type direction distance location
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 968806 675060 ~ 750486 (+)
tbr1 tbr1,LOC106511624 coding upstream 1052488 660601 ~ 666804 (+)
tank NA coding upstream 1092666 613090 ~ 626626 (+)
tanc1 tanc1,LOC108266469 coding upstream 1352444 184448 ~ 366848 (+)
cers6 cers6,LOC107564136,LOC107677898 coding upstream 1562238 105214 ~ 157054 (+)
LOC103029311 NA coding downstream 50499 1775451 ~ 1783041 (+)
LOC103028997 NA coding downstream 58926 1783878 ~ 1796747 (+)
ehhadh NA coding downstream 81443 1806395 ~ 1822220 (+)
nup35 nup35,LOC106582498,LOC107749876 coding downstream 145534 1870486 ~ 1878855 (+)
LOC111194854 NA coding downstream 155196 1880148 ~ 1882693 (+)
G164376 NA non-coding upstream 10651 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 729779 989297 ~ 989513 (+)
G164282 NA non-coding upstream 766863 952065 ~ 952429 (+)
G164276 NA non-coding upstream 774418 944597 ~ 944874 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding upstream 873815 839881 ~ 845477 (+)
G164400 NA non-coding downstream 151492 1876444 ~ 1877085 (+)
G164404 NA non-coding downstream 178114 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 390891 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 454150 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 467863 2192815 ~ 2193188 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 222912 1404101 ~ 1496380 (+)
G164126 NA other upstream 1147099 538279 ~ 572193 (+)
nostrin nostrin other upstream 1544367 131108 ~ 174925 (+)
tspear tspear other downstream 19454 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 77835 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 765092 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3543087 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4392412 6117364 ~ 6123051 (+)

Expression


Co-expression Network