wdr4 (wdr4)


Basic Information

Item Value
gene id wdr4
gene name wdr4
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6339995 ~ 6345403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241745.3
CTGTTGTTGCTGCTGATGTATTAAACAGGCGACGGAGGTTCCCACGTGGTTGTGCAGTGATCATGGCAGCGGTGTGCTGTGCTGGAGACTGGCTGCTGACATGCAGCTCTCAGTATTTAGTAGCAGTGAACATCAGGCAAAGCAGGGAACCGTTCGTGTTTGATTGTTCCAAAGCAGAGCAGAAACCAACGGAAACTGAGGCTGAAAATAAAAGTGATGGTGGGGGTTCTGAGGAAAAGGGAAGTGACCTGATCCTTGCCTGCACCATCTCAACATCAGGAAACTACGCTGCCCTGACAGACGACAACAAACGGCTCATTCTGTTCCGCACGCAACCATCCTGGCAGTGCATCAGCACACGGTGGGTGGTGAGAAGATGTACTTCGCTGATGTTCAGTCAGGCAGAGGATGAGCTGTTTGTGGCTGATAAGTCTGGTGATGTCTATTCATTTTCTGTTCTGGAGCCGCAGAAGCAAGGCGAGCTGAAGCTGGGGCATCTCTCCATGCTGCTGGCCATAACTCTGTCTCCTGACGATAAATACATCATCACAGCAGACAGAGATGAGAAGATCAGAGTGAGCCTTCGCCAATCTCCTTACAATATTCAGGCTTTCTGTTTGGGACACACAGAGTTTGTCAGCACATTGTTTGTTCCAACTGGGCATCCTGAATGGCTCTTGTCTGGCTCAGGGGATGGCACATTAAAGCTTTGGCATTACGAGACTGGCCGGCGGTTACAGAGCATTAACATGAAGCAACTCGGCTTTTCTCAGAGCTCTGAAACAGATGCTGAAAAGCCTCAAAGGTTTGCTGTGAGTCGAATCATCAGCTCACCAAATGGACGTCATGTGGCTGTGcagtgtgagagATTTCCCTCTATTCAGCTGTTTGAGGTGAAGGACGGTTCAGAAGAGCTTTTGATCCCCACAGAGAAGCTTATTCTGCCTCACGCTCCCTGGGACATGGCCTTTGACTCTGAAGGTCGACTTTGGGTCTTGCTGCAGAACAAGGATGCAACTGTGCTCCTGTACACATACTCGCAGGACTGCTGGAAGcagatTGATTCAGAAAGTGCAGATCTTCAGAGAGTAGAAGAAGCACTGAGCACCCAGTGGGACTTCTTCAAAGACTCAGTCGGGGTAGAGAGTCGCTTCCAGCACCTCTACAAGGTGAACTTTGACAACATGGCCTCATATTTGCAGAAGAAACAGGAGAGACTGCAGCAGCAGGATCAGAAAGAGGGCAAGAAGAGGACAGGAGGAAATGGCTCTCAGTCCAACGGGGCAGCAAAAAAGAgcaagaatgagagaaagagggaagcaGTGCCTTCAAACTGCAGCTGAGATTTAGAACCCAGGAGAGACTGAAAATGATGTGTTTAGAATTTATTTAATGGTGGACATTCCAGCAGTAGGTTGCTTGGTTGACAAAAGTGCAACTCAGTTCTGCGTCCCTGCATTGACATTCAAATGTGGATTATTTttacaaatgcagaaatatgatatggatttttaaaataaatgtttttgtttcaaGCAATA
>XM_007241746.3
CTGTTGTTGCTGCTGATGTATTAAACAGGCGACGGAGGTTCCCACGTGGTTGTGCAGTGATCATGGCAGCGGTGTGCTGTGCTGGAGACTGGCTGCTGACATGCAGCTCTCAGTATTTAGTAGCAGTGAACATCAGGCAAAGCAGGGAACCGTTCGTGTTTGATTGTTCCAAAGCAGAGCAGAAACCAACGGAAACTGAGGCTGAAAATAAAAGTGATGGTGGGGGTTCTGAGGAAAAGGGAAGTGACCTGATCCTTGCCTGCACCATCTCAACATCAGGAAACTACGCTGCCCTGACAGACGACAACAAACGGCTCATTCTGTTCCGCACGCAACCATCCTGGCAGTGCATCAGCACACGGTGGGTGGTGAGAAGATGTACTTCGCTGATGTTCAGTCAGGCAGAGGATGAGCTGTTTGTGGCTGATAAGTCTGGTGATGTCTATTCATTTTCTGTTCTGGAGCCGCAGAAGCAAGGCGAGCTGAAGCTGGGGCATCTCTCCATGCTGCTGGCCATAACTCTGTCTCCTGACGATAAATACATCATCACAGCAGACAGAGATGAGAAGATCAGAGTGAGCCTTCGCCAATCTCCTTACAATATTCAGGCTTTCTGTTTGGGACACACAGAGTTTGTCAGCACATTGTTTGTTCCAACTGGGCATCCTGAATGGCTCTTGTCTGGCTCAGGGGATGGCACATTAAAGCTTTGGCATTACGAGACTGGCCGGCGGTTACAGAGCATTAACATGAAGCAACTCGGCTTTTCTCAGAGCTCTGAAACAGATGCTGAAAAGCCTCAAAGGTTTGCTGTGAGTCGAATCATCAGCTCACCAAATGGACGTCATGTGGCTGTGcagtgtgagagATTTCCCTCTATTCAGCTGTTTGAGGTGAAGGACGGTTCAGAAGAGCTTTTGATCCCCACAGAGAAGCTTATTCTGCCTCACGCTCCCTGGGACATGGCCTTTGACTCTGAAGGTCGACTTTGGGTCTTGCTGCAGAACAAGGATGCAACTGTGCTCCTGTACACATACTCGCAGGACTGCTGGAAGatTGATTCAGAAAGTGCAGATCTTCAGAGAGTAGAAGAAGCACTGAGCACCCAGTGGGACTTCTTCAAAGACTCAGTCGGGGTAGAGAGTCGCTTCCAGCACCTCTACAAGGTGAACTTTGACAACATGGCCTCATATTTGCAGAAGAAACAGGAGAGACTGCAGCAGCAGGATCAGAAAGAGGGCAAGAAGAGGACAGGAGGAAATGGCTCTCAGTCCAACGGGGCAGCAAAAAAGAgcaagaatgagagaaagagggaagcaGTGCCTTCAAACTGCAGCTGAGATTTAGAACCCAGGAGAGACTGAAAATGATGTGTTTAGAATTTATTTAATGGTGGACATTCCAGCAGTAGGTTGCTTGGTTGACAAAAGTGCAACTCAGTTCTGCGTCCCTGCATTGACATTCAAATGTGGATTATTTttacaaatgcagaaatatgatatggatttttaaaataaatgtttttgtttcaaGCAATA
>XR_002651330.1
CTGTTGTTGCTGCTGATGTATTAAACAGGCGACGGAGGTTCCCACGTGGTTGTGCAGTGATCATGGCAGCGGTGTGCTGTGCTGGAGACTGGCTGCTGACATGCAGCTCTCAGTATTTAGTAGCAGTGAACATCAGGCAAAGCAGGGAACCGTTCGTGTTTGATTGTTCCAAAGCAGAGCAGAAACCAACGGAAACTGAGGCTGAAAATAAAAGTGATGGTGGGGGTTCTGAGGAAAAGGGAAGTGACCTGATCCTTGCCTGCACCATCTCAACATCAGGAAACTACGCTGCCCTGACAGACGACAACAAACGGCTCATTCTGTTCCGCACGCAACCATCCTGGCAGTGCATCAGCACACGGTGGGTGGTGAGAAGATGTACTTCGCTGATGTTCAGTCAGGCAGAGGATGAGCTGTTTGTGGCTGATAAGTCTGGTGATGTCTATTCATTTTCTGTTCTGGAGCCGCAGAAGCAAGGCGAGCTGAAGCTGGGGCATCTCTCCATGCTGCTGGCCATAACTCTGTCTCCTGACGATAAATACATCATCACAGCAGACAGAGATGAGAAGATCAGAGTGAGCCTTCGCCAATCTCCTTACAATATTCAGGCTTTCTGTTTGGGACACACAGAGTTTGTCAGCACATTGTTTGTTCCAACTGGGCATCCTGAATGGCTCTTGTCTGGCTCAGGGGATGGCACATTAAAGCTTTGGCATTACGAGACTGGCCGGCGGTTACAGAGCATTAACATGAAGCAACTCGGCTTTTCTCAGAGCTCTGAAACAGATGCTGAAAAGCCTCAAAGGTTTGCTGTGAGTCGAATCATCAGCTCACCAAATGGACGTCATGTGGCTGTGcagtgtgagagATTTCCCTCTATTCAGCTGTTTGAGGTGAAGGACGGTTCAGAAGAGCTTTTGATCCCCACAGAGAAGCTTATTCTGCCTCACGCTCCCTGGGACATGGCCTTTGACTCTGAAGGTCGACTTTGGGTCTTGCTGCAGAACAAGGATGCAACTGTGCTCCTGTACACATACTCGCAGGACTGCTGGAAGcagatTGATTCAGAAAGTGCAGATCTTCAGAGAGTAGAAGAAGCACTGAGCACCCAGTGGGACTTCTTCAAAGACTCAGTCGGGGTAGAGAGTCGCTTCCAGCACCTCTACAAGGTGAACTTTGACAACATGGCCTCATATTTGCAGAAGAAACAGGAGAGACTGCAGCAGCAGGATCAGAAAGAGGGCAAGAAGAGGACAGGAGGAAATGGCTCTCAGTCCAACGGGGCAGCAAAAAAGAgcaagaatgagagaaagagggaagcaGTGCCTTCAAACTGCAGCTGAGATTTAGAACCCAGGAGAGACTGAAAATGATGTGTTTAGAATTTATTTAATGGTGGACATTCCAGCAGTAGGTTGTCCCTGCATTGACATTCAAATGTGGATTATTTttacaaatgcagaaatatgatatggatttttaaaataaatgtttttgtttcaaGCAATA
>XR_002651331.1
CTGTTGTTGCTGCTGATGTATTAAACAGGCGACGGAGGTTCCCACGTGGTTGTGCAGTGATCATGGCAGCGGTGTGCTGTGCTGGAGACTGGCTGCTGACATGCAGCTCTCAGTATTTAGTAGCAGTGAACATCAGGCAAAGCAGGGAACCGTTCGTGTTTGATTGTTCCAAAGCAGAGCAGAAACCAACGGAAACTGAGGCTGAAAATAAAAGTGATGGTGGGGGTTCTGAGGAAAAGGGAAGTGACCTGATCCTTGCCTGCACCATCTCAACATCAGGAAACTACGCTGCCCTGACAGACGACAACAAACGGCTCATTCTGTTCCGCACGCAACCATCCTGGCAGTGCATCAGCACACGGTGGGTGGTGAGAAGATGTACTTCGCTGATGTTCAGTCAGGCAGAGGATGAGCTGTTTGTGGCTGATAAGTCTGGTGATGTCTATTCATTTTCTGTTCTGGAGCCGCAGAAGCAAGGCGAGCTGAAGCTGGGGCATCTCTCCATGCTGCTGGCCATAACTCTGTCTCCTGACGATAAATACATCATCACAGCAGACAGAGATGAGAAGATCAGAGTGAGCCTTCGCCAATCTCCTTACAATATTCAGGCTTTCTGTTTGGGACACACAGAGTTTGTCAGCACATTGTTTGTTCCAACTGGGCATCCTGAATGGCTCTTGTCTGGCTCAGGGGATGGCACATTAAAGCTTTGGCATTACGAGACTGGCCGGCGGTTACAGAGCATTAACATGAAGCAACTCGGCTTTTCTCAGAGCTCTGAAACAGATGCTGAAAAGCCTCAAAGGTTTGCTGTGAGTCGAATCATCAGCTCACCAAATGGACGTCATGTGGCTGTGcagtgtgagagATTTCCCTCTATTCAGCTGTTTGAGGTGAAGGACGGTTCAGAAGAGCTTTTGATCCCCACAGAGAAGCTTATTCTGCCTCACGCTCCCTGGGACATGGCCTTTGACTCTGAAGGTCGACTTTGGGTCTTGCTGCAGAACAAGGATGCAACTGTGCTCCTGTACACATACTCGCAGGACTGCTGGAAGatTGATTCAGAAAGTGCAGATCTTCAGAGAGTAGAAGAAGCACTGAGCACCCAGTGGGACTTCTTCAAAGACTCAGTCGGGGTAGAGAGTCGCTTCCAGCACCTCTACAAGGTGAACTTTGACAACATGGCCTCATATTTGCAGAAGAAACAGGAGAGACTGCAGCAGCAGGATCAGAAAGAGGGCAAGAAGAGGACAGGAGGAAATGGCTCTCAGTCCAACGGGGCAGCAAAAAAGAgcaagaatgagagaaagagggaagcaGTGCCTTCAAACTGCAGCTGAGATTTAGAACCCAGGAGAGACTGAAAATGATGTGTTTAGAATTTATTTAATGGTGGACATTCCAGCAGTAGGTTGTCCCTGCATTGACATTCAAATGTGGATTATTTttacaaatgcagaaatatgatatggatttttaaaataaatgtttttgtttcaaGCAATA

Function

symbol description
wdr4 Predicted to contribute to tRNA (guanine-N7-)-methyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within RNA (guanine-N7)-methylation and tRNA processing. Predicted to be part of tRNA methyltransferase complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome. Orthologous to human WDR4 (WD repeat domain 4).

NR:

description
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function

KEGG:

id description
K15443 TRM82, WDR4; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241745.3 True 1541 mRNA 0.48 11 6339995 6345403
XM_007241746.3 False 1538 mRNA 0.48 11 6339995 6345403
XR_002651330.1 False 1509 misc_RNA 0.48 12 6339995 6345403
XR_002651331.1 False 1506 misc_RNA 0.48 12 6339995 6345403

Neighbor

gene id symbol gene type direction distance location
tmprss3 tmprss3 coding upstream 32667 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 46227 6289550 ~ 6293768 (+)
nr1i2 NA coding upstream 477088 5835481 ~ 5862907 (+)
maats1 NA coding upstream 505333 5801891 ~ 5834662 (+)
btla NA coding upstream 701057 5628989 ~ 5638938 (+)
ccdc148 NA coding downstream 283203 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 415948 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 492983 6838386 ~ 6884350 (+)
LOC103026442 NA coding downstream 551231 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 567709 6913112 ~ 6916257 (+)
G165469 NA non-coding upstream 14237 6319319 ~ 6325758 (+)
G165450 NA non-coding upstream 92487 6247265 ~ 6247508 (+)
G165432 NA non-coding upstream 94355 6245251 ~ 6245640 (+)
G165418 NA non-coding upstream 96080 6243527 ~ 6243915 (+)
LOC111188246 NA non-coding upstream 96779 6241844 ~ 6243216 (+)
G165474 NA non-coding downstream 2600 6348003 ~ 6348651 (+)
G165484 NA non-coding downstream 43299 6388702 ~ 6388998 (+)
LOC111194884 NA non-coding downstream 55091 6400494 ~ 6412938 (+)
G165487 NA non-coding downstream 70941 6416344 ~ 6418249 (+)
G165494 NA non-coding downstream 97597 6443000 ~ 6443272 (+)
LOC111194881 NA other upstream 102009 6160400 ~ 6237986 (+)
G165406 NA other upstream 194026 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 216944 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1041267 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3847004 2490044 ~ 2492991 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1039730 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1331383 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1683992 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2635159 8980562 ~ 9067879 (+)
G166015 NA other downstream 2692839 9038242 ~ 9085850 (+)

Expression


Co-expression Network