LOC103041636


Basic Information

Item Value
gene id LOC103041636
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6913112 ~ 6916257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243275.3
TTACATCGCACCCCAGCACAAAAGCCCTGCTTGCCATTGCCTGTGTGCCTGGTCATTATAATGCAAGATGGGACGTTTCTCAAAGTGTAGAAGAGAAGAATGGTGGGGCAGAACAGTGACTGGGCATGATGCACAGCCATTAAACTAATCTTTCCACTTGTAACCTTTTCCAATAAGACGTGAAAGGAAGCAGGGGTGAATTAAGGACATTTCAAGACCTGTGCACTGACCAGAAAGGAACATTTAAGCTAAGTCAAGATGGCAGACACTACAAGACCGCTTGAGAGTGAAAGCTGCGCCGTGCTGGAACCAGCACTGGACATCAGTGGAGGAATAACGCTGGAGGCCCTGCAGACTTTAGAAGAAGCAGGAGGGAGTCAGACTGCTCTGGTTATGACTGAAGGAgatgattctgtgttttacagtgAAGATGAAGAAATTCCACAGGAAGTTTCCGTCTCTGATCCACGGTCTGTGTCTTTGGGACCCATAGGGCCTCTAGAGCCTCAGTCTTCACCACAGATTCTGGATTTGGGAGCTGAAGAGCTGGTGCAGTCTCTGAGTCACAGCACTGAGCTAATGGAATCCGGATATATGTATTATAGCGGTGCCGAGCAGGAGGAAGTGGAGAATATAATGGAGAGTAAAATAAACCATATTTCATCATCAGCCCATGTTCCAGCAGTGGAGGGTGAGACTGAAGCGGCACTCGAAGAGCTTTTACAGCCTTCAACAGTACCATATGCATGGTCTACTAGaaatgaatctgcagtgttgtCTGCAGAAGAAAAGAAGCAGGCAGACAACAACTCACTGGGACACGTGACGACTGGGATTCCAAAAGAACTGCATCTGGAGCAGCCAACACTGGAAAAAGACTCAGCAGAGGGCGATGAAAGCACTGCACCAAATGAACAGCATGAAGAAACAGAGGATCAGGAACAAGACAGACATGTAAAATACGGAACGGTCTCATACCGGCGTATCCGCAGGGGTCTCACGCGCCAGAGGATCGAGGAGTTTGAAGCCATGATGCAGCTGTAAACGTGCTGGAAGACCACCAGAAAATGTGAGCTCAAGAAGCAGACTGGGactgaacaaaaaaagaaaaacaacattttatgcCTTTTCAAGATaaaacatgtttgctgtgttgcATTTACTAGCCCTTTAACAACAATTTACCCAGATTGCAGTTCACTGCATGAATGCGTGATCAGCTATTAGGGATGGATTTCTGAGCTGAAACATATGAGAAAATACTTTTggttaattaaacactaaaacactacaaGACTTAACAGGTAAGAGGATGAAGGCACACAATCCTCCAGAGAAAAGACTCATTACTGGAATATTTGTACAGCTCAACTACTAAGCTCAGACGCAACAGGTCATTTCATACCGCAGTTCAGCTGCATTGTTAACATGTGTGCATTCTTGTATAAATTTCATCAGTATTAATCCTGGTGTAATGCATTGTAAAGTTTCTGCCAGACATGATCtactgaatatttatacatttaacagATTGCATGCTAGGCTTGCATCTTGCTTTGTACATTGCATGAGTAACAATAAAAGGAAACTACAACCAAATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243275.3 True 1603 mRNA 0.44 2 6913112 6916257

Neighbor

gene id symbol gene type direction distance location
LOC103026442 NA coding upstream 4360 6896634 ~ 6908752 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding upstream 28762 6838386 ~ 6884350 (+)
LOC103030586 acvr1 coding upstream 80556 6761351 ~ 6832556 (+)
ccdc148 NA coding upstream 179925 6628606 ~ 6733187 (+)
tmprss3 tmprss3 coding upstream 605784 6296186 ~ 6307328 (+)
nr4a2 nr4a2 coding downstream 193901 7110158 ~ 7118514 (+)
LOC103038369 fam126b coding downstream 387328 7303585 ~ 7376769 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding downstream 571161 7487418 ~ 7490552 (+)
LOC103040141 ctds1,ctdsp1,LOC108423903,LOC107714388,LOC107660585,LOC107602156,LOC107657521,LOC103359966 coding downstream 578894 7495151 ~ 7538080 (+)
LOC103036377 pcbp3,LOC108423908,LOC107728912,LOC107660579,LOC107657516,LOC102308458,LOC106920547,LOC108266078,LOC106581674 coding downstream 838606 7754863 ~ 7868505 (+)
G165530 NA non-coding upstream 22342 6885848 ~ 6890770 (+)
G165534 NA non-coding upstream 161329 6751412 ~ 6751783 (+)
G165523 upp2,LOC107699962 non-coding upstream 171311 6664247 ~ 6741801 (+)
G165507 NA non-coding upstream 441387 6470766 ~ 6471725 (+)
G165494 NA non-coding upstream 469840 6443000 ~ 6443272 (+)
G165643 NA non-coding downstream 167744 7084001 ~ 7084301 (+)
G165648 NA non-coding downstream 256523 7172780 ~ 7173360 (+)
G165656 NA non-coding downstream 331477 7247734 ~ 7247939 (+)
G165688 NA non-coding downstream 578384 7494641 ~ 7535072 (+)
G165692 NA non-coding downstream 610934 7527191 ~ 7527677 (+)
wdr4 wdr4 other upstream 567709 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 675126 6160400 ~ 6237986 (+)
G165406 NA other upstream 767143 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 790061 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1614384 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 468876 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 760529 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1113138 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2064305 8980562 ~ 9067879 (+)
G166015 NA other downstream 2121985 9038242 ~ 9085850 (+)

Expression


Co-expression Network