LOC103047200 (sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689)


Basic Information

Item Value
gene id LOC103047200
gene name sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5423935 ~ 5437232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253221.3
GCGGGAGTCCCGCAGACCGAAAGTGGAAGAGCTGAGCGGCGGAGCGCGAGACTTACTGCTGCTCTGACCGAGGAATGAGTCCCATAGCCCggccacagacacacacaccagccgCGTCGGCAGGAGCCATGTGTTAGAGCTGCTGGgcacttttaccaaataaacacacacttagCTGCACAAAGCCCCACAAAGCCTCCATCATGGTGATCATGAGAGAGAGCAACGCGGGGTGCGAGACCAGCGCTGCCCAGGGAAGGCCTCTCCAGGTGGGATTCTACGAAATCCTCCGCACACTGGGCAAAGGAAACTTCGCTGTGGTCAAACTGGCCAGGCACAAAGTGACTAAAACACAGGTTGCCATTAAAATAATAGACAAGACACGACTGAACTCCTCCAACCTGGAGAAAATCTACAGGGAGGTTCAGATCATGAAGCTGCTGAATCACCCGCACATCATCAAGCTTTATCAGGTCATGGAGACCAAAGACATGCTGTACATCGTCACGGAATATGCAAAAAATGGAGAGATGTTCGACTTCCTGACGTCCAACGGACGGATGAGTGAAGCTGAGGCACGGAAAAAGTTCTGGCAGATCCTGACAGCTGTGGATTACTGCCACCGGCACCACATCGTCCACCGGGACCTCAAGACTGAGAACCTGCTGCTGGACGCCAACATGAACATCAAACTGGCAGacTTCGGGTTTGGAAACTTCTATAAGACTGGCGAGCCCCTCTCCACGTGGTGTGGCAGCCCACCGTACGCCGCCCCTGAGGTCTTTGAGGGAAAAGAGTATGAGGGTCCACAGTTGGATATTTGGAGTCTGGGTGTTGTATTATATGTTTTGGTGTGCGGCTCGTTGCCGTTTGATGGGGAAAGTTTGCCAGCTTTGAGACAGAGAGTGACTGAAGGACGATTCAGAATACCCTTCTTCATGTCAGAAGACTGTGAGAATCTGATCCGGAAGATGTTGGTGGTTGACCCGGCCAAGCGCATCACCGTCGCTCAGATCAAGCAGCACCGGTGGATGCTGGCTGACCCCACCGCCCCCCACCAGacgctcacacactccctcagcGACTACAACTCCAACCTGGGGGACTACAGTGAGCCCGTGCTTGGCATCATGCAGACGCTGGGAATCGACAGGCAGAGGACTGTGGAGTCTCTTCAGAGCAGCAGCTACAATCACTTCTCTGCCATCTACTACCTTCTCCTGGAACGGGTGAAGGAGCACCGCAGCCAGCAGCTGAACCGGCAGTGCGGCGCTTGGAACCAGAGAAGCAGGAGCACGTCCGATTCCTCTGGCCCAGAGGTGATCATGGAGTCGACTGACGGCTTCCGCCCTGCTTTCCCTCCTGTCACTGCTAAGATGAACCCGCTGGTCCATTCGCAGATGGAGTGTGACCAGGGAGGTCTGTTTCAGCGGGTGGTGTGCCCAGTCGAGGCCAGTCTCAGTGGGTTGCTGTGGAATCGCTCCATTTCCCCCAACAGCCTGCTGGAGACCACCATCAGTGAAGAGGTGCGACCAGGAGACTTGGAAGAAGAGGAAGTGGCTCTGcatgccccgcccccacctcttCCAAGCACCGCCTCTCGCAGACACACCCTCGCTGAAGTCTCCACCCGCTTCCATCAGTGCAACCCACCTTGTATTGTCATCAGTCCTTCAGATGGTGCCTCTTCTGACAGCTGTCTGAAGTCTTCTTCTAACCCAGCCCCAGCCTTGTCCGCCGCTGCTGTAGCAGACCTCTCAGCTCTGCTGTCTTCTGGGATCGGGCCTGGAGCTTCTGGGCCTGTCGGAGCCCCTCTCGCCCTCTCCTCTAACCGGCTCCTGCAGAACCAGGGCAGTCTACATGCGGTCAGCTTCCAGGAGGGCAGAAGGGCTTCTGACACGTCCCTTACACAAGGACTGAAGGCGTTCCGACAGCAGCTGAGGAAGAACACCCGAGCCAAGGGTCTCCTGGGCCTGAATAAGATCAAGGGTCTGGCCAGACAGGTGTGCCCTCCGACCTCGTGCCCCAGAGGCAGCCGGGGGTCACTGGGGCCGACCCTGTGCCCCCCATCCAGCCTACAAGGCTCCAGCGGCCCCCGAGAACGCCGCAGCATGCTGGAGGaggtgctgcatcagcagaggATGCTGCAGATCCAGCACCAGCCACACGTCCAGCCTCAGCCACAGCAGCAGGCTGCTCTCTTCCTGTCTCAGTCCCACCAACTgccctcctctcctccctccaaCAACCTCTTCGCTCCAGCTGCCCTGTTCTCCAACCCCCCCATCCAGACCCCCAACCAACCCCTTATTCCAGTGTGCCAGCAGAACGCACTGCCACTCCAGCACAGCCTAtggcagcaacagcagcagcagatacaaCCTCTggactcctcctcttcttcttcttcttctacttgtTCAAcatcttcctcatcctcctctctttctccggTGGTGTGCACAGCCCACCTCCTGGAGGCTCGCTTGCATATCAGCCAGCAGCCCCACTTCCAGCCTCCCCCTCaggcccagcagcagcagcacctccagcaaTTCCAGAGCCAAACCCACGGTCACTTCCAGTTCCTGCCCCAGCAGATAGGCTGGAACCTGGGATCCAGTGGCAGCAGCCAGGCTTCTGAGCTCCAGGAGCAGCTGGCCTGTGCTGGACAACAGCTCAACAGCTGCGTGATGGTCAAATAAAGGACAATAAATAAACTTGAA
>XM_007253222.3
GCGGGAGTCCCGCAGACCGAAAGTGGAAGAGCTGAGCGGCGGAGCGCGAGACTTACTGCTGCTCTGACCGAGGAATGAGTCCCATAGCCCggccacagacacacacaccagccgCGTCGGCAGGAGCCATGTGTTAGAGCTGCTGGgcacttttaccaaataaacacacacttagCTGCACAAAGCCCCACAAAGCCTCCATCATGGTGATCATGAGAGAGAGCAACGCGGGGTGCGAGACCAGCGCTGCCCAGGGAAGGCCTCTCCAGGTGGGATTCTACGAAATCCTCCGCACACTGGGCAAAGGAAACTTCGCTGTGGTCAAACTGGCCAGGCACAAAGTGACTAAAACACAGGTTGCCATTAAAATAATAGACAAGACACGACTGAACTCCTCCAACCTGGAGAAAATCTACAGGGAGGTTCAGATCATGAAGCTGCTGAATCACCCGCACATCATCAAGCTTTATCAGGTCATGGAGACCAAAGACATGCTGTACATCGTCACGGAATATGCAAAAAATGGAGAGATGTTCGACTTCCTGACGTCCAACGGACGGATGAGTGAAGCTGAGGCACGGAAAAAGTTCTGGCAGATCCTGACAGCTGTGGATTACTGCCACCGGCACCACATCGTCCACCGGGACCTCAAGACTGAGAACCTGCTGCTGGACGCCAACATGAACATCAAACTGGCAGacTTCGGGTTTGGAAACTTCTATAAGACTGGCGAGCCCCTCTCCACGTGGTGTGGCAGCCCACCGTACGCCGCCCCTGAGGTCTTTGAGGGAAAAGAGTATGAGGGTCCACAGTTGGATATTTGGAGTCTGGGTGTTGTATTATATGTTTTGGTGTGCGGCTCGTTGCCGTTTGATGGGGAAAGTTTGCCAGCTTTGAGACAGAGAGTGACTGAAGGACGATTCAGAATACCCTTCTTCATGTCAGAAGACTGTGAGAATCTGATCCGGAAGATGTTGGTGGTTGACCCGGCCAAGCGCATCACCGTCGCTCAGATCAAGCAGCACCGGTGGATGCTGGCTGACCCCACCGCCCCCCACCAGacgctcacacactccctcagcGACTACAACTCCAACCTGGGGGACTACAGTGAGCCCGTGCTTGGCATCATGCAGACGCTGGGAATCGACAGGCAGAGGACTGTGGAGTCTCTTCAGAGCAGCAGCTACAATCACTTCTCTGCCATCTACTACCTTCTCCTGGAACGGGTGAAGGAGCACCGCAGCCAGCAGCTGAACCGGCAGTGCGGCGCTTGGAACCAGAGAAGCAGGAGCACGTCCGATTCCTCTGGCCCAGAGCGGGTGGTGTGCCCAGTCGAGGCCAGTCTCAGTGGGTTGCTGTGGAATCGCTCCATTTCCCCCAACAGCCTGCTGGAGACCACCATCAGTGAAGAGGTGCGACCAGGAGACTTGGAAGAAGAGGAAGTGGCTCTGcatgccccgcccccacctcttCCAAGCACCGCCTCTCGCAGACACACCCTCGCTGAAGTCTCCACCCGCTTCCATCAGTGCAACCCACCTTGTATTGTCATCAGTCCTTCAGATGGTGCCTCTTCTGACAGCTGTCTGAAGTCTTCTTCTAACCCAGCCCCAGCCTTGTCCGCCGCTGCTGTAGCAGACCTCTCAGCTCTGCTGTCTTCTGGGATCGGGCCTGGAGCTTCTGGGCCTGTCGGAGCCCCTCTCGCCCTCTCCTCTAACCGGCTCCTGCAGAACCAGGGCAGTCTACATGCGGTCAGCTTCCAGGAGGGCAGAAGGGCTTCTGACACGTCCCTTACACAAGGACTGAAGGCGTTCCGACAGCAGCTGAGGAAGAACACCCGAGCCAAGGGTCTCCTGGGCCTGAATAAGATCAAGGGTCTGGCCAGACAGGTGTGCCCTCCGACCTCGTGCCCCAGAGGCAGCCGGGGGTCACTGGGGCCGACCCTGTGCCCCCCATCCAGCCTACAAGGCTCCAGCGGCCCCCGAGAACGCCGCAGCATGCTGGAGGaggtgctgcatcagcagaggATGCTGCAGATCCAGCACCAGCCACACGTCCAGCCTCAGCCACAGCAGCAGGCTGCTCTCTTCCTGTCTCAGTCCCACCAACTgccctcctctcctccctccaaCAACCTCTTCGCTCCAGCTGCCCTGTTCTCCAACCCCCCCATCCAGACCCCCAACCAACCCCTTATTCCAGTGTGCCAGCAGAACGCACTGCCACTCCAGCACAGCCTAtggcagcaacagcagcagcagatacaaCCTCTggactcctcctcttcttcttcttcttctacttgtTCAAcatcttcctcatcctcctctctttctccggTGGTGTGCACAGCCCACCTCCTGGAGGCTCGCTTGCATATCAGCCAGCAGCCCCACTTCCAGCCTCCCCCTCaggcccagcagcagcagcacctccagcaaTTCCAGAGCCAAACCCACGGTCACTTCCAGTTCCTGCCCCAGCAGATAGGCTGGAACCTGGGATCCAGTGGCAGCAGCCAGGCTTCTGAGCTCCAGGAGCAGCTGGCCTGTGCTGGACAACAGCTCAACAGCTGCGTGATGGTCAAATAAAGGACAATAAATAAACTTGAA
>XM_022680099.1
GCGGGAGTCCCGCAGACCGAAAGTGGAAGAGCTGAGCGGCGGAGCGCGAGACTTACTGCTGCTCTGACCGAGGAATGAGTCCCATAGCCCggccacagacacacacaccagccgCGTCGGCAGGAGCCATGTGTTAGAGCTGCTGGgcacttttaccaaataaacacacacttagCTGCACAAAGCCCCACAAAGCCTCCATCATGGTGATCATGAGAGAGAGCAACGCGGGGTGCGAGACCAGCGCTGCCCAGGGAAGGCCTCTCCAGGTGGGATTCTACGAAATCCTCCGCACACTGGGCAAAGGAAACTTCGCTGTGGTCAAACTGGCCAGGCACAAAGTGACTAAAACACAGGTTGCCATTAAAATAATAGACAAGACACGACTGAACTCCTCCAACCTGGAGAAAATCTACAGGGAGGTTCAGATCATGAAGCTGCTGAATCACCCGCACATCATCAAGCTTTATCAGGTCATGGAGACCAAAGACATGCTGTACATCGTCACGGAATATGCAAAAAATGGAGAGATGTTCGACTTCCTGACGTCCAACGGACGGATGAGTGAAGCTGAGGCACGGAAAAAGTTCTGGCAGATCCTGACAGCTGTGGATTACTGCCACCGGCACCACATCGTCCACCGGGACCTCAAGACTGAGAACCTGCTGCTGGACGCCAACATGAACATCAAACTGGCAGacTTCGGGTTTGGAAACTTCTATAAGACTGGCGAGCCCCTCTCCACGTGGTGTGGCAGCCCACCGTACGCCGCCCCTGAGGTCTTTGAGGGAAAAGAGTATGAGGGTCCACAGTTGGATATTTGGAGTCTGGGTGTTGTATTATATGTTTTGGTGTGCGGCTCGTTGCCGTTTGATGGGGAAAGTTTGCCAGCTTTGAGACAGAGAGTGACTGAAGGACGATTCAGAATACCCTTCTTCATGTCAGAAGACTGTGAGAATCTGATCCGGAAGATGTTGGTGGTTGACCCGGCCAAGCGCATCACCGTCGCTCAGATCAAGCAGCACCGGTGGATGCTGGCTGACCCCACCGCCCCCCACCAGacgctcacacactccctcagcGACTACAACTCCAACCTGGGGGACTACAGTGAGCCCGTGCTTGGCATCATGCAGACGCTGGGAATCGACAGGCAGAGGACTGTGGAGTCTCTTCAGAGCAGCAGCTACAATCACTTCTCTGCCATCTACTACCTTCTCCTGGAACGGGTGAAGGAGCACCGCAGCCAGCAGCTGAACCGGCAGTGCGGCGCTTGGAACCAGAGAAGCAGGAGCACGTCCGATTCCTCTGGCCCAGAGGTGATCATGGAGTCGACTGACGGCTTCCGCCCTGCTTTCCCTCCTGTCACTGCTAAGATGAACCCGCTGGTCCATTCGCAGATGGAGTGTGACCAGGGAGGTCTGTTTCAGCGGGTGGTGTGCCCAGTCGAGGCCAGTCTCAGTGGGTTGCTGTGGAATCGCTCCATTTCCCCCAACAGCCTGCTGGAGACCACCATCAGTGAAGAGGTGCGACCAGGAGACTTGGAAGAAGAGGAAGTGGCTCTGcatgccccgcccccacctcttCCAAGCACCGCCTCTCGCAGACACACCCTCGCTGAAGTCTCCACCCGCTTCCATCAGTGCAACCCACCTTGTATTGTCATCAGTCCTTCAGATGGTGCCTCTTCTGACAGCTGTCTGAAGTCTTCTTCTAACCCAGCCCCAGCCTTGTCCGCCGCTGCTGTAGCAGACCTCTCAGCTCTGCTGTCTTCTGGGATCGGGCCTGGAGCTTCTGGGCCTGTCGGAGCCCCTCTCGCCCTCTCCTCTAACCGGCTCCTGCAGAACCAGGGCAGTCTACATGCGGTCAGCTTCCAGGAGGGCAGAAGGGCTTCTGACACGTCCCTTACACAAGGACTGAAGGCGTTCCGACAGCAGCTGAGGAAGAACACCCGAGCCAAGGGTCTCCTGGGCCTGAATAAGATCAAGGGTCTGGCCAGACAGGTGTGCCCTCCGACCTCGTGCCCCAGAGGCAGCCGGGGGTCACTGGGGCCGACCCTGTGCCCCCCATCCAGCCTACAAGGCTCCAGCGGCCCCCGAGAACGCCGCAGCATGCTGGAGGaggtgctgcatcagcagaggATGCTGCAGATCCAGCACCAGCCACACGTCCAGCCTCAGCCACAGCAGCAGGCTGCTCTCTTCCTGTCTCAGTCCCACCAACTgccctcctctcctccctccaaCAACCTCTTCGCTCCAGCTGCCCTGTTCTCCAACCCCCCCATCCAGACCCCCAACCAACCCCTTATTCCAGTGTGCCAGCAGAACGCACTGCCACTCCAGCACAGCCTAtggcagcaacagcagcagcagatacaaCCTCTggactcctcctcttcttcttcttcttctacttgtTCAAcatcttcctcatcctcctctctttctccggTGGTGTGCACAGCCCACCTCCTGGAGGCTCGCTTGCATATCAGCCAGCAGCCCCACTTCCAGCTCCTGCCCCAGCAGATAGGCTGGAACCTGGGATCCAGTGGCAGCAGCCAGGCTTCTGAGCTCCAGGAGCAGCTGGCCTGTGCTGGACAACAGCTCAACAGCTGCGTGATGGTCAAATAAAGGACAATAAATAAACTTGAA

Function

symbol description
sik1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cellular response to glucose starvation; intracellular signal transduction; and protein phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 30. Orthologous to human SIK1 (salt inducible kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase SIK2-like

GO: NA

KEGG:

id description
K19008 SIK1; serine/threonine-protein kinase SIK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253221.3 True 2726 mRNA 0.57 14 5423935 5437232
XM_007253222.3 False 2615 mRNA 0.57 13 5423935 5437232
XM_022680099.1 False 2657 mRNA 0.57 15 5423935 5437232

Neighbor

gene id symbol gene type direction distance location
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 118826 5300599 ~ 5305109 (+)
LOC111194874 NA coding upstream 190296 5219361 ~ 5233639 (+)
LOC111194953 NA coding upstream 409356 4996621 ~ 5014579 (+)
LOC103031000 NA coding upstream 429739 4973645 ~ 4994196 (+)
stat4 stat4 coding upstream 456457 4925058 ~ 4967478 (+)
btla NA coding downstream 191757 5628989 ~ 5638938 (+)
maats1 NA coding downstream 364659 5801891 ~ 5834662 (+)
nr1i2 NA coding downstream 398249 5835481 ~ 5862907 (+)
LOC103026554 LOC108423842 coding downstream 852318 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 858954 6296186 ~ 6307328 (+)
G165159 NA non-coding upstream 90816 5332779 ~ 5333119 (+)
G165053 NA non-coding upstream 117492 5305742 ~ 5306443 (+)
G165034 NA non-coding upstream 306820 5116915 ~ 5117115 (+)
G165013 NA non-coding upstream 367128 5016734 ~ 5056807 (+)
G165015 NA non-coding upstream 397672 5025254 ~ 5026263 (+)
G165176 NA non-coding downstream 67509 5504741 ~ 5513293 (+)
G165229 NA non-coding downstream 146295 5583527 ~ 5585118 (+)
G165238 NA non-coding downstream 174080 5611312 ~ 5649236 (+)
G165273 NA non-coding downstream 275448 5712680 ~ 5729989 (+)
G165276 NA non-coding downstream 281813 5719045 ~ 5719974 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 125207 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 2930944 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 3585848 1802787 ~ 1838087 (+)
tspear tspear other upstream 3663375 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 3927555 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 680132 6117364 ~ 6123051 (+)
G165406 NA other downstream 707705 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 723168 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 902763 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1947901 7385133 ~ 7485349 (+)

Expression


Co-expression Network