osgepl1 (osgepl1)


Basic Information

Item Value
gene id osgepl1
gene name osgepl1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4822303 ~ 4827751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253242.3
gcTTATTCCAAGTGTGCACTATAAAGGGTACAGTAATGTATTTAGATTGACCCCCTGACATTCTTGTACTTGGAGCACACAGACTGAAGCACAGTGTAGGCTATAGTGTAGACAgtgcagacagagagataatAAATTCAGTGAGTTATATTGAGAGTGATCTGAGAGCATCAAGACTTAAGCTTAAATTACAGTCAGTTTAATAGGTGAACTTAATGTTATGGCAAGGTTTGCACGTGGTGTGTTTTTCAGGTATACTGCTCTATTCAGGCTGCAGCAATGCATGGATGTTCATACACAGCCTGTTACTCCCAGGCTGGTGCTGGGCATCGAGACCAGCTGTGATGAAACAGGAGCTGCTGTTCTGGACGAGACAGGGAGGATCCTTGGAGAAGCTCTGCACTCCCAGAAAGAAGTGCACTTAAAAACAGGTGGGGTCATCCCAACAGTCGCCCAGCGTCTCCATAAGGAAAACATCTCCAGAGTGGTTCAGGAAGCCTTGGACAGGAGCGGAGTTGCACCCAGTGATCTCTCTGCTGTGGCCACCACAGTAAAACCTGGCCTGGCCCTGAGTCTGGGCGTCGGTCTGCACTTCAGCCTGGATTTTGTAAAGCTTCACAAAAAGCCCTTCATCCCCATCCATCATATGGAGGCTCACGCCCTGACTGTGCGCATGCTGAGTCCTCTGGAGTTTCCGTTTCTAGTGCTGCTGGTGTCTGGAGGACATTCTCTTCTCGCAGTAGCAAAAGGAATCgatgactttttacttttagGGCAAACGCTGGATGAGGCCCCAGGAGACACACTGGACAAGATAGCAAGAAGACTATCTCTTATTAAGCATCCAAAGTGTTCCAGCCTAAGCGGTGGACAAGCGATAGAGCTTTTGGCGAAGGAAGGGGATCGGCAGCAGTTCCAGTTCAAAACACCAATGGGGAAGCAATATGACTGCAATTTCTCATACGCTGGTCTGCGTAATCAAGTCACAATGGCTATTATcaaaaaagagaaggaggaaGgCATCCAGCAAGGTCAGCTATTATCCTGCGTGGAGGATATCGCTGCTGCCACTCAGCACACTGTAGCCTCGCACACAGCTAAGCGAACACATCGGGCTATTTTGTTCTGTAAGGCCAAAGGTCTTCTACCAGAGAACAGCCCGACTTTGGTCGTGTCTGGAGGAGTAGCGAGCAATCAATACATCAGGGAAGTGCTGAGAGTAGTCACAGACGCCACCGGCCTGCAGTTACTCTGTCCTCCATCTAAGTTTTGCACAGATAATGGAGTGATGATTGCATGGAATGGTGTTGAGAGGCTAAAAGAAGGAAAGGGGATTTTGCCTTACACTCAGGATGTCAGCTATGAGCCAAAggCTCCACTTGGCAGAGATATATCTACAGAGGTGAGAGATGCTGCAATCAAGGTTCCCCATCTGAAACTGAAGATTAAATgctgatatacagtattcatAGTTTATTTAAAGGTCTTTAagcaatgtattttatatttataaataaaaacacctcAGTAATTGA

Function

symbol description
osgepl1 Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to act upstream of or within tRNA threonylcarbamoyladenosine modification. Predicted to be active in mitochondrion. Orthologous to human OSGEPL1 (O-sialoglycoprotein endopeptidase like 1).

NR:

description
probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253242.3 True 1535 mRNA 0.47 7 4822303 4827751

Neighbor

gene id symbol gene type direction distance location
ormdl1 ormdl1,LOC107602148 coding upstream 4611 4810548 ~ 4817692 (+)
mstn mstn coding upstream 61989 4756744 ~ 4760314 (+)
hibch hibch coding upstream 88082 4671132 ~ 4734221 (+)
vwc2l vwc2l,LOC107660607 coding upstream 373683 4379022 ~ 4448620 (+)
LOC103033219 NA coding upstream 778710 4039986 ~ 4043593 (+)
LOC103025618 LOC108436803 coding downstream 26652 4854403 ~ 4859014 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 45174 4872925 ~ 4887416 (+)
stat4 stat4 coding downstream 97307 4925058 ~ 4967478 (+)
LOC103031000 NA coding downstream 145894 4973645 ~ 4994196 (+)
LOC111194953 NA coding downstream 168870 4996621 ~ 5014579 (+)
G164952 NA non-coding upstream 85593 4698332 ~ 4736710 (+)
G164944 NA non-coding upstream 171410 4616803 ~ 4650893 (+)
G164910 NA non-coding upstream 318892 4501948 ~ 4503411 (+)
G164899 NA non-coding upstream 330594 4449979 ~ 4491709 (+)
G164990 NA non-coding downstream 66394 4894145 ~ 4896061 (+)
G165013 NA non-coding downstream 188983 5016734 ~ 5056807 (+)
G165015 NA non-coding downstream 197503 5025254 ~ 5026263 (+)
G165034 NA non-coding downstream 289164 5116915 ~ 5117115 (+)
G165053 NA non-coding downstream 477991 5305742 ~ 5306443 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 2329312 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2984216 1802787 ~ 1838087 (+)
tspear tspear other upstream 3061743 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 3325923 1404101 ~ 1496380 (+)
G164126 NA other upstream 4250110 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 440288 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 1289613 6117364 ~ 6123051 (+)
G165406 NA other downstream 1317186 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 1332649 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 1512244 6339995 ~ 6345403 (+)

Expression


Co-expression Network