vwc2l (vwc2l,LOC107660607)


Basic Information

Item Value
gene id vwc2l
gene name vwc2l,LOC107660607
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4379022 ~ 4448620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253249.3
cagcagcagcagcagcagccgcgtCTCCGCCGTAGCTCAACTTCTCCTCGCGTTACAAGGTGGAAAACGTAATGACTTTGGCTCGAGCGTCGCGCGCTTTCGCGGCCGGTGCGTCGGGGATCTTTAATCTGGCTTCTCAGATGGTTGGATATAAGACCTAATGGCGTTTCCTCGCGCACCTTGCAGCATTTGGAAGTTGATTGAAATTCCACTCATCGCTGCAGATGACTAGGTAATCAGCCGGCACCAGAGGGGGAAGTATAATCATTTCTGtgggttttctttttctttttttttcttttttttggggggggtggTCCTTTTTATTCTTTGTCTCTTTCCTCTTTCGtgccttttttttgttgttgttgttgcacaGCTGCACGAGCGGATGAGCGGTCACTTAACTCAGATGACCGGGAAAGGATAAACATGTTGGCGTCCGACACATTTCTGCTCATCTCTGACATTTCTGGATATTTCGTCGCCTTCAAGTCGGCTTCAGAACATCGAGAGGCATCGAGGGGCATGATGATGAGAGATCCTTTGTAAACatctaaaaagaaaagaaaaaatttaTTGAAGATGTATTGGGATGTATTGGTTCTCTGTTCTGCTCGACTGGAGTAAGCTGTTCTTTTCCCTTTTCGCCTTTTGTCACCTGCTGTTCAGAATCGGAGTTGGGATTGTTTTTCCTTTCGTTATatttttcttccttccttcgTTCATCGTCAACGAGGTGCTCGTTTAGGAGCTcgttatctctttttttttctacctcTCATTTGCAAACAAAGTGGAAGCAGACGTTTCATCACGGACAGCCACGGCGAAGGATGGGCCCTCTCTTCCCTGCTGCCTGCATCGTGCTGCTGGCCGTGAACGCCGCTGTGCTGCAGGCCGAGGACTACCCCGCGGACGAGGCCGAGGCCGAGCGGGGGACCACCAACGACATACTCTTCGATGATTACAGGGGCAAAGGCTGCGTGGATGACAGCGGCTTCGTCTACAAGCTCGGCGAGCGCTTCTTCCCCGGCCACTCGAACTGCCCGTGCGTGTGCACGGAGGACGGGCCGGTGTGCGAGCAGCCCGAGTGCCCCAAAATACACCCCAAGTGCACCAAGGTGGAGCACAATGGCTGCTGCCCGGAGTGCAAGGAGGTCAAGAACTTTTGTGAATACAGAGGGAAGACGTACAAAATCCTGGAGGAGTTCAAGCCTTCGCCCTGTGAGTGGTGTCGCTGTGAGCCCAACAGCGAGGTGCACTGTGTGGTGGCTGACTGTGCAGTCCCGGAGTGCGTCAACCCAGTGTACGAGCCAGAACAATGCTGTCCCATATGTAAAAACGGTCCGAACTGCTACGCCGGAACGACGATCATTCCAGCCGGCATAGAAGTGAAGGTGGACGACTGCACCATCTGCCGCTGCCACAACGGAGACTGGTGGAAGCCGGCACAGTGCTTGCGGCGAGAGTGCCTCAACGGCCAGCCGTCGTCGTAAACACCCCCTCCGGAGCGGGGAGGAGGAGGGGCACACGAGTGACAGCGCCGCCCGGCACCGGGGCGGCACATCTAGGGACACTGGAGGATGGACTGGCAGGAGCACAATATGCCTGGCAAAACTGAGGCTGCTGAGCGAGCTGAGACACACTGAGATAATtcatacatacacaaatacacaatacaaacaCACTCCAGACCTTGGCAACGTGTCAGATGAGTAAAGGAAAGGAAACATCAGAAGacactgtttgtttttgtttgtttgtttctataaTGGTTCCATCCCACTTTGATTTCTTGCTAACGCTGCTGAACCTCACAAGTTTATACGCTCTCGTGACtcagagagggaggaagagctGCTTCGAATTGAAGATATTTGTCAGAGAGATCatctgtgtgttgtttttggcgGTTTACAGCCGCATTCACAAACCTGGGAGGCTCCTCGtgtagggatttttttttagctcatgCTATTACatccagaaaatgaaaaaaaaaaaaaagaactacgATTTGCGGTTAAATTGTTTTTGAGGGAGGAAAGCAGGATGGCTCCAAATGAAACTTTTTGGCagattaaaaactaaaaccctaaaaaaaaaaaaaaaaaaaaatacccagatATTTTTA

Function

symbol description
vwc2l Acts upstream of or within nervous system development. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human VWC2L (von Willebrand factor C domain containing 2 like).

NR:

description
von Willebrand factor C domain-containing protein 2-like isoform X1

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K24521 VWC2; brorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253249.3 True 2137 mRNA 0.50 4 4379022 4448620

Neighbor

gene id symbol gene type direction distance location
LOC103033219 NA coding upstream 335429 4039986 ~ 4043593 (+)
cps1 cps1 coding upstream 1367132 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1503956 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1723308 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1905125 2440656 ~ 2473897 (+)
hibch hibch coding downstream 222512 4671132 ~ 4734221 (+)
mstn mstn coding downstream 308124 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 361928 4810548 ~ 4817692 (+)
osgepl1 osgepl1 coding downstream 373683 4822303 ~ 4827751 (+)
LOC103025618 LOC108436803 coding downstream 405783 4854403 ~ 4859014 (+)
G164893 NA non-coding upstream 30367 4348249 ~ 4348655 (+)
G164888 NA non-coding upstream 88458 4290316 ~ 4290564 (+)
G164845 NA non-coding upstream 369002 3967496 ~ 4010020 (+)
G164725 ikzf2 non-coding upstream 576423 3800336 ~ 3802599 (+)
G164718 NA non-coding upstream 698987 3650375 ~ 3680035 (+)
G164899 NA non-coding downstream 1359 4449979 ~ 4491709 (+)
G164907 NA non-coding downstream 3428 4452048 ~ 4454815 (+)
G164910 NA non-coding downstream 53328 4501948 ~ 4503411 (+)
G164944 NA non-coding downstream 168183 4616803 ~ 4650893 (+)
G164952 NA non-coding downstream 249712 4698332 ~ 4736710 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1886031 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2540935 1802787 ~ 1838087 (+)
tspear tspear other upstream 2618462 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2882642 1404101 ~ 1496380 (+)
G164126 NA other upstream 3806829 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 819419 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 1668744 6117364 ~ 6123051 (+)
G165406 NA other downstream 1696317 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 1711780 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 1891375 6339995 ~ 6345403 (+)

Expression


Co-expression Network