LOC103033219


Basic Information

Item Value
gene id LOC103033219
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4039986 ~ 4043593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253262.3
TATAATGAACGATGATGCAGAGAGTCTTCCAGGCTTCACCATGAGAACACTGATCTTCATTGCTTTCTCGCTCTACCACTTCACTGTGGCGCAGGTTGATGATGGCGGCTCCACCGGGTCACAGGGGGTCCACTCTGAGTATTCAGAGCATTATTGCAGCCCCAAAATCCTGTCGGAGCTCAAAGAACTGAAGAGCTTAGCAGCAGAGCAGAAGACTGCTTTAGAGGAACTGAAGAAACAAGCAGCAGGAAATCAGTGCAGCACTGAAATTCAGTCGGAGCTGAAGGAGCTGAAAACCACGGTGGCAGAGCAGAAGGTTAAGCTGGAAGAACTTCAGAAAGAGATAGCAGataaaCCTAATGTGGCGTTCTCAGCTTCACTCTTTGGTGAGGGAGGTCAAACGCTTGGAGGGTACAATTCTGAGGTTGTTCTGAAATTCCAGAAAGTCTTTGTGAACATTGGGCATGCATACAACCCGTCTACTGGAATGTTTACAGCACCAGTGAGAGGGGTGTACTACTTTGGCTTCTCTGCTTTCGCTAATGGCAAAAACGCTATGGGCGTACATCTGCGCAAACGGACAGAACATAGTGGCCGCGTACGATTACAACAACAGCCATAAAGATGTCAATGGAGCTAACAGGGCCATTCTTCTGTTGGAAAAGGGAGACCAAGTGAATATTGGTCTTTGGTCTGGACTGAGCATTTTTGACAGTTACAATAGTGTCAGCACCTTCTCTGGATTCTTGCTCTTCAAAatgtaatactaatactaaaactaaTTTGGCAACA

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253262.3 True 792 mRNA 0.46 4 4039986 4043593

Neighbor

gene id symbol gene type direction distance location
cps1 cps1 coding upstream 1028096 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1164920 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 1384272 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1566089 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 1848072 2093349 ~ 2191914 (+)
vwc2l vwc2l,LOC107660607 coding downstream 335429 4379022 ~ 4448620 (+)
hibch hibch coding downstream 627539 4671132 ~ 4734221 (+)
mstn mstn coding downstream 713151 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 766955 4810548 ~ 4817692 (+)
osgepl1 osgepl1 coding downstream 778710 4822303 ~ 4827751 (+)
G164845 NA non-coding upstream 29966 3967496 ~ 4010020 (+)
G164725 ikzf2 non-coding upstream 237387 3800336 ~ 3802599 (+)
G164718 NA non-coding upstream 359951 3650375 ~ 3680035 (+)
LOC111194872 NA non-coding upstream 422296 3615389 ~ 3617690 (+)
G164699 NA non-coding upstream 957036 3082416 ~ 3082950 (+)
G164888 NA non-coding downstream 246723 4290316 ~ 4290564 (+)
G164893 NA non-coding downstream 304656 4348249 ~ 4348655 (+)
G164902 NA non-coding downstream 347789 4391382 ~ 4391679 (+)
G164903 NA non-coding downstream 351719 4395312 ~ 4439720 (+)
G164899 NA non-coding downstream 406386 4449979 ~ 4491709 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1546995 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2201899 1802787 ~ 1838087 (+)
tspear tspear other upstream 2279426 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2543606 1404101 ~ 1496380 (+)
G164126 NA other upstream 3467793 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 1224446 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 2073771 6117364 ~ 6123051 (+)
G165406 NA other downstream 2101344 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 2116807 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 2296402 6339995 ~ 6345403 (+)

Expression


Co-expression Network