LOC103026442


Basic Information

Item Value
gene id LOC103026442
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6896634 ~ 6908752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253756.3
aggctagACAGGAGAGAATCACCCTCCCCAGCAGGAGAAGAAACAAGTTTAAGGAAGAAAGAAGTTACTGTAAAAGTGTGAGAagaaaaaagacacacacacatatacacacacacacacacacactctcacacacaggtTCACACACAGCAGTCACATGACCCGAATATCCGCTTTGACACATTTTACTCAGCCGACCGCAGGCGTGCAGGTTGGATGTGGCAGGCTGCAGTGAGAGAGGAGGCTGCGTGAGCTCTGTCTGACTGCCTGCAGTGACCATGAGCATCAACATGAACCGTAAACcagcgctgcagcagcagaggaGCCTGGACACCTACATCCTGGACTCCAACTCCTCCAGGAAGAGTCTTCCCTGGAGATGGCGTTCCTTAAACAACGGGAAACAGCTCAAGAACGGAGAGAACAGCGGAGGGACTCTGCCACGGGGACGCAATCAGTTGAACAGAATGTGCTCAAACTCCCTGGTGGACTACACAGATCCTCAGAGGACAACAATTGTTTTAGAAAAGCAAGACAATGAAGCGTACGGATTTGAAGTTCAGACATACGGTCTTCAGCTGAGGAACAGTAACGAGGTGGAGATGTGCACGTTTGTGAGCAGTGTGCAGGAGGGCTGCGCAGCAGAGTCTGCAGGTTTAACTGCTGGTGACATCATACTGACGGTAAATGGAGTCAGCATTAAGGGGTTCAGCCATCAGCAAATTATAGAGCTGATCCGCGAGTCCATCAACATGCTAAAgatggAGACGGTCAGTGGGAGTGTGGTGAAGAGAATTGAGCTGGAGAAGAGGATGCGATTGCTCAAGCAAACACTGCATGAGAAATGGGTGGAGCTCAAGGCCCTCACGCTGCAGGAAAAACGTCTTACTCGAGGTAACCTGAGCGTCAGCTCTCAGCACCCTTCCATGGACTCGCTCATGTCCATCTCCTCTCCGACGGGTCGGTGCGGCCAACGTTTTTCCAGCGACAGCAGCTGCCTGAGCGTACTGACAGACGACAGCGAGGACTTACTGTCCCCGGTATTTGACGAATACAGCCAGTTCAGCCCAACCGACCCAAATCGTGAATTCTTTAGTAAGGAATCTCAGCCAGACTGGCCCTCGTTCCGGCCCACCCTGACCCGCACCCGCAGCatcagcagcggcagcagcaggagcaccTGCCAATCTCCTACATGGGACAACGCCCGGGCCTCCTCTTCGGCCCAAAGCTCTGTGTTTGGCACTTTGCCCCGCAGAGGGAGGAAAGCAAGCATGCGCAAACACATTCTGAAGTTTATACCTGGACTAAACCACtctgtggaggaggaggaggccaCTTGAGACACCACTGTTGGTCCTATAGACTTCTGTCACATTAGACAAATGTGAAATTTTCTTGTCTAACTAATGAACTGATTTTCTGAGGAGTACAGAATGAATGTGCCTAATAAAAGTGGCTTTTTTTGTGAACATTTAATATTTGAAAGACATTCAAATATCAAGAACTCCTGACACTCTAGAACAGATGGGGTTCTACAAACTCTCACATTCACCCAGTTTTGTTGACGGGTTCCATGTTGGCCCCACATATGGATATCAGTGATGAGCTTCATCTGGATTATACACTGCACATGATGCTTAGATGGGACCCATTTGAGATCCTGGTGACCACACATGCTCAAACCCACCCATGTGAGCCCCTTCATGGCTTGAGTTTGATGAAAGCAAGCCACACACGAACATTAGCATTACAAacttctgcacacacacatatatatacacttaaagaACTGTATAAGAACATGTGCAGAAACAGGTAGCACAGGGTGCTGTTCAATCAATGTATATAAGTGAATACGTGAATATGTGACACTGGACATTTTACTGCTATTGCTGTAATTGCTTTGCAATTTGCATACTTGTAAAGTGCACCAAGCACTGCCCTGGTGTGCACTGATTCATTGCATTAAACTCACATTGCAATAGCTGTTTCCTACTAAAGAATCTCACTGATGTCTGCGATCTTCTACCTGTacaggagagtgtgtgagaatgaGTTGAGCAATCATGCAATTCTCCTAGATGTGACctagatgtttagatgttctCATCACTGCatgtagcaaaaaaataaaggttgttttttt

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253756.3 True 2149 mRNA 0.48 8 6896634 6908752

Neighbor

gene id symbol gene type direction distance location
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding upstream 12284 6838386 ~ 6884350 (+)
LOC103030586 acvr1 coding upstream 64078 6761351 ~ 6832556 (+)
ccdc148 NA coding upstream 163447 6628606 ~ 6733187 (+)
tmprss3 tmprss3 coding upstream 589306 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 602866 6289550 ~ 6293768 (+)
LOC103041636 NA coding downstream 4360 6913112 ~ 6916257 (+)
nr4a2 nr4a2 coding downstream 201406 7110158 ~ 7118514 (+)
LOC103038369 fam126b coding downstream 394833 7303585 ~ 7376769 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding downstream 578666 7487418 ~ 7490552 (+)
LOC103040141 ctds1,ctdsp1,LOC108423903,LOC107714388,LOC107660585,LOC107602156,LOC107657521,LOC103359966 coding downstream 586399 7495151 ~ 7538080 (+)
G165530 NA non-coding upstream 5864 6885848 ~ 6890770 (+)
G165534 NA non-coding upstream 144851 6751412 ~ 6751783 (+)
G165523 upp2,LOC107699962 non-coding upstream 154833 6664247 ~ 6741801 (+)
G165507 NA non-coding upstream 424909 6470766 ~ 6471725 (+)
G165494 NA non-coding upstream 453362 6443000 ~ 6443272 (+)
G165643 NA non-coding downstream 175249 7084001 ~ 7084301 (+)
G165648 NA non-coding downstream 264028 7172780 ~ 7173360 (+)
G165656 NA non-coding downstream 338982 7247734 ~ 7247939 (+)
G165688 NA non-coding downstream 585889 7494641 ~ 7535072 (+)
G165692 NA non-coding downstream 618439 7527191 ~ 7527677 (+)
wdr4 wdr4 other upstream 551231 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 658648 6160400 ~ 6237986 (+)
G165406 NA other upstream 750665 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 773583 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1597906 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 476381 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 768034 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1120643 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2071810 8980562 ~ 9067879 (+)
G166015 NA other downstream 2129490 9038242 ~ 9085850 (+)

Expression


Co-expression Network