G56940


Basic Information

Item Value
gene id G56940
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8759641 ~ 8766277 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64825
CTGGTCCTCCTGATAAACCATAAAGACTCCTGACGGTTACATTTGTTTTCAGAATAAATGTTTAAAGCAGTAATAATGCATCCTTTAAAACCAAACCTTTAAAACCATCCAAAGGGACATTATGAAAGGGAAGAATCACCCATACAGGGCTCTAGAATCACCACTAGAGGGAGCCATGTATACCTGAGAGATCAGGAGCTGGCAGGAAGCTAGCTCCTTCTCGTTGGCCTGCATTTTGCGCACTGTGTCTGTCTGTGTGCTCTCAAGCTGTTTACTGCGGTTGACCAGAGACTTCACTTCTGACTTCATTTTACTGATGAAGAGCCGTGCCATGGTGAATTCCTCCTCCATTCCTCCGTTCATCTCTGTCATCTTGTGGTCATTCAAGGCAATAACACTGCCAATCTCATTGAGGTCCCGGAGCAATAAACCGAGGATCTCTGCTGATCTCTTTTTGTGATGTCCACTGAGTTCCTGCAGGGCAGACAGATCCCTCTCCACACCAGCCAGAGCAGCACTCTTTTGTACAAGCTCCTCTGAGAGCTGTTGGTTTGTCTTGCCTCTCTCCTCCACCTCATGGCTTTTCTGGTCATAGTTCACCGCTAGCTCCTCTAAGGCCTGGAGCACCTCCTTCACCTCCTCTTTTGCTGCCTCGTTCTCATGCTGCAAACGGCTCAGATCGTCCTGGATCTTCTCATAGTCACGCCGTGTGGATGCCAGTAACTCATCCTGATCCACCATCTGCTGCTTCAGGTTCTCTGCCAGCTGACTGTGCTGGTTGATCTCATCATCCTTGTCGTCTAGCTGCTGATATAGGTCATTGATCAGCTCCTCATACTGGGTTTTCTCTGAATCAGAAAGAGGCTCAGGGGGCGGAGCTGAAGTGTCAATTATGGGAGCGACTTCTGAATTCTTTGATTCTTTATTGCTGTGCTGCTCATCAACAGGTACAGTCTCACCTTTTCGCCATCGTTTGAGCTCATTTTCTAGCCGCTGGATGATGATTTTCAGACCTCTGGTCTTCTCTTTCTCTTTCTCATATTTCTTCTTCCATTCCTCAGCTGTGAGCTCCATGTTCACAGAAACTGTGTTTTTGATGGTTTTGGCTCTCTGACCGAACATGAGAGTGGATTTGGTCTCAGCCTCATTAAATACAGAGGGAGAGCAGCAGATGACGATGGTGGTTCTGCAGTTCCCACCCAAAGAGTCCTGAAGGATCCTGGTCATTTTACTATCTCTGTAGGGCACATGGGTTTTGGTTCCTTCAGCCAGGGCTGAGATGACGTTCCCCAGAGCAGAGAGAGACTTATTGATATTTTTAGCCTCGTCCAACACAGATCCTTCTGCTCCAGTTTTACTGACCTTTTCACTTCCTGCAAGATCCACC
>TU64823
GTGTAGTTTAGCGAGCTCCTCCATTAGTGAGTCGTGGCTTTCCTCTAGCTGTCTCTTCTTCTGTTCCATGTTCTGCATGTAGTCTGTGAGGGATTTGATCTTTGCCTGATGCTGAGAGATCAGGAGCTGGCAGGAAGCTAGCTCCTTCTCGTTGGCCTGCATTTTGCGCACTGTGTCTGTCTGTGTGCTCTCAAGCTGTTTACTGCGGTTGACCAGAGACTTCACTTCTGACTTCATTTTACTGATGAAGAGCCGTGCCATGGTGAATTCCTCCTCCATTCCTCCGTTCATCTCTGTCATCTTGTGGTCATTCAAGGCAATAACACTGCCAATCTCATTGAGGTCCCGGAGCAATAAACCGAGGATCTCTGCTGATCTCTTTTTGTGATGTCCACTGAGTTCCTGCAGGGCAGACAGATCCCTCTCCACACCAGCCAGAGCAGCACTCTTTTGTACAAGCTCCTCTGAGAGCTGTTGGTTTGTCTTGCCTCTCTCCTCCACCTCATGGCTTTTCTGGTCATAGTTCACCGCTAGCTCCTCTAAGGCCTGGAGCACCTCCTTCACCTCCTCTTTTGCTGCCTCGTTCTCATGCTGCAAACGGCTCAGATCGTCCTGGATCTTCTCATAGTCACGCCGTGTGGATGCCAGTAACTGTGTGGGTGCAGAATGGGGAAGTCACACACTTATGTTAGTTGGAGGACTGTTGAATTCCTGCTTCTTTGTGGATGTCATTAGTATATACACTTCCATTAAAATGTTTGGAGTCAGAAATATATTTTTTTTAATTAAAGAGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64825 False 1387 lncRNA 0.48 9 8759641 8766114
TU64823 True 831 lncRNA 0.47 4 8764579 8766277

Neighbor

gene id symbol gene type direction distance location
CI01000009_08739549_08745500 NA coding downstream 14141 8739549 ~ 8745500 (-)
CI01000009_08737485_08739374 MAP3K19 coding downstream 20267 8737253 ~ 8739374 (-)
CI01000009_08718943_08719773 NA coding downstream 37547 8718807 ~ 8722094 (-)
CI01000009_08700152_08716708 NA coding downstream 42567 8700120 ~ 8717074 (-)
CI01000009_08683782_08694491 NA coding downstream 64220 8683680 ~ 8695421 (-)
CI01000009_08842201_08845751 MMADHC coding upstream 75834 8842111 ~ 8845751 (-)
CI01000009_08858198_08860555 NA coding upstream 90033 8856310 ~ 8860563 (-)
CI01000009_08870258_08879256 NA coding upstream 103922 8870199 ~ 8879256 (-)
CI01000009_08882412_08884827 EAF2 coding upstream 115239 8881516 ~ 8885373 (-)
CI01000009_08930289_08935481 TSN coding upstream 163643 8929920 ~ 8935790 (-)
G56929 NA non-coding downstream 45614 8712932 ~ 8714027 (-)
G56912 NA non-coding downstream 84227 8668715 ~ 8675414 (-)
G55948 NA non-coding downstream 162529 8596854 ~ 8597112 (-)
G55919 NA non-coding downstream 166340 8592927 ~ 8593301 (-)
G56942 NA non-coding upstream 1134 8767411 ~ 8768925 (-)
G56943 NA non-coding upstream 3041 8769318 ~ 8774402 (-)
G56977 NA non-coding upstream 57344 8823621 ~ 8861192 (-)
G56946 NA non-coding upstream 96789 8863066 ~ 8869192 (-)
G56986 NA non-coding upstream 119147 8885424 ~ 8885706 (-)
G55814 NA other downstream 331629 8425821 ~ 8428012 (-)
G53515 NA other downstream 3254393 5502395 ~ 5505248 (-)
G52828 NA other downstream 4528172 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 5497684 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 5860234 2883688 ~ 2893975 (-)
G59097 NA other upstream 3521940 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5209111 13975099 ~ 13978614 (-)
G59490 NA other upstream 5267287 14033564 ~ 14037873 (-)
G59811 NA other upstream 6096120 14862397 ~ 14887464 (-)

Expression


Co-expression Network